View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_14 (Length: 289)
Name: NF6199_low_14
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 3338799 - 3339063
Alignment:
| Q |
21 |
cattacttttacaatattaactttat---------ttgtattaccattatcattaaccatcagaaagataagcacatgcttgtatgtccaattttctatt |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3338799 |
cattacttttacaatattaactttatcaaagattgttgtattaccattatcattaaccattagaaagataagcacatgcttgtatgtccaattttctatt |
3338898 |
T |
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| Q |
112 |
gcattaaaaatcgataataagcgacaagtataatagaaagaaaaagtatcacacatctcacttatactagcgaaaaacagacatattagttttttgagag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3338899 |
gcattaaaaatcgataataagcgacaagtataatagaaagaaaaagtatcacacatctcacttatactagcgaaaaacagacatattagtttttttagag |
3338998 |
T |
|
| Q |
212 |
aaaaacagacatattagttattagtgttcctcgttaacttttctattacacttaatcatatacctatattat |
283 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3338999 |
aaaaacagaca-------tattagtgttcctcgttaacttttctattacacttaatcatatacctatattat |
3339063 |
T |
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