View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_15 (Length: 286)
Name: NF6199_low_15
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 29292779 - 29293029
Alignment:
| Q |
12 |
gagatgaatggccaaatgaatgttttacacgttttgatatcatcttacattttaaattgcggttaatttgtccctacgaaaattctttataaagtgaatg |
111 |
Q |
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| T |
29292779 |
gagataaatggcctaatgaatattttacacgttttgat-----cttacaatttaaattgcggttaatttgtccctacgaaaattctttataaagtgaatg |
29292873 |
T |
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| Q |
112 |
atgtctctcacttataaattcatttttaagctttaagaaactcttaacaaatatttgtgactaataagtatttcttaaaaagaaacaaatgctagaaaac |
211 |
Q |
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| T |
29292874 |
atgtctctcacttataaattcatttttaagctttaagaaactcttaacaaatatttgtgactaataagtatttcttaaaaagaaacaaatgctagaaaac |
29292973 |
T |
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| Q |
212 |
attaaagtataaatttcaaagaagtaaatacctatagctgtattatttgagctattttc |
270 |
Q |
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| T |
29292974 |
attaaagtataaatttca---aagtaaatacctatagctgtattatttgagctattttc |
29293029 |
T |
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