View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_22 (Length: 248)
Name: NF6199_low_22
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 29292783 - 29292546
Alignment:
| Q |
3 |
atctctacctccaaatattaagtcctgggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataattgagaaat |
102 |
Q |
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| T |
29292783 |
atctctacctccaaatattaagtcttaggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataagtgagaaat |
29292684 |
T |
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| Q |
103 |
atctctctttctacttgttggttttgttgttttaagttagattcaatacaaaatctaatacgatactagagcttatcttaatacctacttgaccatcaga |
202 |
Q |
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| T |
29292683 |
atctctctttctactcgttggttttgttgttttaagttagattcaatacaaaatctaatacgatactagagcttatc-taatatctacttgaccatcgga |
29292585 |
T |
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| Q |
203 |
tatcgagccactcaagtcacactttaaaggtagcctatg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29292584 |
tatcgagccactcaagtcacactttaaaggtagcctatg |
29292546 |
T |
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