View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6199_low_23 (Length: 245)
Name: NF6199_low_23
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38392999 - 38392771
Alignment:
| Q |
1 |
tatatgatcatgtttaaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38392999 |
tatatgatcatgtttaaaattaagttgcttagctatttaccttgtcggttacaccgaagcactccttcatgactaaaatgaaaattattcatgctcatag |
38392900 |
T |
|
| Q |
101 |
acaatataaattcaaccactccttcatgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctgatttcagttcttgtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38392899 |
acaatataaattcaaccactccttcatgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctaatttcagttcttgtgga |
38392800 |
T |
|
| Q |
201 |
ttaagtcatacaaaaatgagcataaattc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38392799 |
ttaagtcatacaaaaatgagcataaattc |
38392771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 38401591 - 38401480
Alignment:
| Q |
8 |
tcatgtttaaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaatat |
107 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38401591 |
tcatgtttaaaatttagtttcttaactatttaccttgtcagttacaccgaagcacaccttcatgactataatgaaaattattcatcctcatagacaatat |
38401492 |
T |
|
| Q |
108 |
aaattcaaccac |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38401491 |
aaattcaaccac |
38401480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 38384154 - 38383914
Alignment:
| Q |
7 |
atcatgtttaaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaata |
106 |
Q |
| |
|
||||||||||||||| || | |||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
38384154 |
atcatgtttaaaatttaggtgcttagctatttaccttgtcggttacaccaaagcactccttcatgactataatgaaaattattcatcctcatagacaata |
38384055 |
T |
|
| Q |
107 |
taaattcaaccactccttcatgca-----tc------ctctaacttgttatttt--------ctttcttttctctccattgaattgttttgttctgattt |
187 |
Q |
| |
|
|||| | ||||| | | | ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38384054 |
taaaatgaaccagaacataaagcaaatagtcattaatctctagcttgttattttctttctttctttcttttctctccattgaattgttttgttctaattt |
38383955 |
T |
|
| Q |
188 |
cagttcttgtggattaagtcatacaaaaatgagcataaattc |
229 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38383954 |
caattcttgtggattaagtcatac-aaaatgagcataaattc |
38383914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 38401429 - 38401347
Alignment:
| Q |
147 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattc |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
38401429 |
tttctttcttttcactccattgaattgttttgttctaatttcaattcttgtgaattaagtcatacgaaaatgagcataaattc |
38401347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 37843775 - 37844011
Alignment:
| Q |
6 |
gatcatgtttaaaattaagttaattagctatttaccttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcatagacaat |
105 |
Q |
| |
|
||||||| |||||||| || | ||||||||||||||||||||||||||||| |||| | ||||| |||| |||||||||||||||||||||| ||||| |
|
|
| T |
37843775 |
gatcatgcttaaaatttagatgcttagctatttaccttgtcagttacaccgatgcactcgttcataactataatgaaaattattcatgctcatggacaaa |
37843874 |
T |
|
| Q |
106 |
ataaattcaaccactccttcatgcatc-----------ctctaacttgttattttctttc--ttttctctccattgaattgttttgttctgatttcagtt |
192 |
Q |
| |
|
||||| ||| |||| | | | ||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||| || |
|
|
| T |
37843875 |
ataaaatcagccacaacataaagcaaatagacaataatctctattttgttattttctttccattctctctccattgaattgttttgttctaatttcaatt |
37843974 |
T |
|
| Q |
193 |
cttgtggattaagtcatacaaaaatgagcataaattc |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37843975 |
cttgtggaataagtcatacaaaaatgagcataaattc |
37844011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 37838366 - 37838448
Alignment:
| Q |
147 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37838366 |
tttctttcttttctctccattgaattgttttgttttcatttcaattcttgtggattaagtcatacaaaaatgagcataaattc |
37838448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 37838191 - 37838310
Alignment:
| Q |
4 |
atgatcatgtttaaaattaagttaattagctatttac----cttgtcagttacaccgaagcacaccttcatgactaaaatgaaaattattcatgctcata |
99 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| |||| |||||||||| |||||| | ||| |||||| || ||||| |||||| | |||| |
|
|
| T |
37838191 |
atgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataacgaaaactattcacggtcatc |
37838290 |
T |
|
| Q |
100 |
gacaatataaattcaaccac |
119 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
37838291 |
gacaatataaaatcaaccac |
37838310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University