View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_31 (Length: 221)
Name: NF6199_low_31
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 40246729 - 40246920
Alignment:
| Q |
15 |
cagacaattcaagtgacccaacaacacatttataataagttcagatagtatattagattatgaacttaattcaagtattcaaccccgaaaatcaacttgt |
114 |
Q |
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| T |
40246729 |
cagacaattcaagtgacccaacaacacatttagaataagttcagatagtatattagattatgaacttaattcaagtattcaaccccgaaaatcaacttgt |
40246828 |
T |
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| Q |
115 |
aaggcgcgataactgcccaaactttataaattctatctaagtcgtatccctgaccaatttaagacttgagtttttctcctaagggatgatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40246829 |
aaggcgcgataactgcccaaactttataaattctatctaagtcgtatccctgaccaatttaagacttgagtttttctcctaagggatgatat |
40246920 |
T |
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