View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6199_low_32 (Length: 214)

Name: NF6199_low_32
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6199_low_32
NF6199_low_32
[»] chr2 (1 HSPs)
chr2 (13-198)||(28646082-28646268)
[»] chr8 (7 HSPs)
chr8 (101-198)||(16843269-16843366)
chr8 (81-198)||(9825266-9825383)
chr8 (124-191)||(27289831-27289898)
chr8 (79-115)||(21512231-21512267)
chr8 (135-186)||(39902994-39903045)
chr8 (103-159)||(9066890-9066946)
chr8 (79-147)||(30342798-30342866)
[»] chr7 (1 HSPs)
chr7 (18-181)||(37605566-37605730)
[»] chr3 (1 HSPs)
chr3 (79-179)||(32135094-32135194)
[»] chr6 (2 HSPs)
chr6 (79-157)||(32317770-32317848)
chr6 (133-181)||(31169162-31169210)
[»] chr4 (2 HSPs)
chr4 (79-194)||(52878993-52879107)
chr4 (79-198)||(9021577-9021696)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 28646082 - 28646268
Alignment:
Q  13 aaaacaagggttttaagcccctaaaatttttagatctcgtattagacctt-cagtcttttttgctttaatatattttcgtaagtcaaactctttaaacat 111  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28646082 aaaacaagggttttaggcccctaaattttttagatctcgtattagaccatacagtctttttcgctttaatatattttcgtaagtcaaactctttaaacat 28646181  T
Q  112 ttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtagctatttt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28646182 ttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatgttgcatgtttgatcttaaaagtagctatttt 28646268  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 16843269 - 16843366
Alignment:
Q  101 tctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtagctatttt 198  Q
    ||||||||||| |||| |||| ||||  ||| ||||||||| |||| ||||||||||||  || |||||||||||||||||| |||||||||||||||    
T  16843269 tctttaaacatgtttgcgtctagctcaattaatagttaaatagagaattgtagacttttagttcatattgcaagtttgatctcaaaagtagctatttt 16843366  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 9825383 - 9825266
Alignment:
Q  81 tatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgat 180  Q
    ||||||||||||||||||| ||||||||||||||    | |  |||| || ||||||||||| |||||| |||| || |  ||||| |||||||||||||    
T  9825383 tatattttcgtaagtcaaattctttaaacattttgcgctttaactcgattggtagttaaatgaagagttatagagttgttgtttatgttgcaagtttgat 9825284  T
Q  181 cttaaaagtagctatttt 198  Q
    | ||||  ||||||||||    
T  9825283 cataaatatagctatttt 9825266  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 27289831 - 27289898
Alignment:
Q  124 ctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtag 191  Q
    ||||||||||||||||||| |||||| |||||||||  || || ||||||||||||||| ||| ||||    
T  27289831 ctcggttagtagttaaatgaagagttatagacttttagttcatgttgcaagtttgatctcaaaggtag 27289898  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 21512267 - 21512231
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacattttt 115  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21512267 aatatattttcgtaagtcaaattctttaaacattttt 21512231  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 39903045 - 39902994
Alignment:
Q  135 gttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaa 186  Q
    |||||||||||||||||||| || |  ||||| |||||||||||||||||||    
T  39903045 gttaaatggagagttgtagatttgtagtttatgttgcaagtttgatcttaaa 39902994  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 9066890 - 9066946
Alignment:
Q  103 tttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagactttt 159  Q
    |||||||||||||||| ||  |||||| ||| ||| | |||||||||||||||||||    
T  9066890 tttaaacatttttgtgcctaactcggtcagtggtttagtggagagttgtagactttt 9066946  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 30342798 - 30342866
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagag 147  Q
    ||||||||||| |||||| || | |||||||||||||| |||   |||  |||||||||||||||||||    
T  30342798 aatatattttcataagtcgaattttttaaacatttttgcgtcgaactcaattagtagttaaatggagag 30342866  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 37605566 - 37605730
Alignment:
Q  18 aagggttttaagcccctaaaatttttagatctcgtattagaccttcagtcttttttgctt-taatatattttcgtaagtcaaactctttaaacatttttg 116  Q
    ||||||||||| || |||||||||||||||||| ||||| | | | | | ||||| ||||  |||||||||| || | ||||| |||||||| ||||| |    
T  37605566 aagggttttaaacctctaaaatttttagatctcatattaaatcctgaatatttttcgcttgaaatatatttttgtcattcaaattctttaaatattttcg 37605665  T
Q  117 tgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatc 181  Q
     ||||  |||||||| |||||| || |||||||||||| |||| ||| || ||||||||||||||    
T  37605666 cgtctaactcggttattagttatatagagagttgtagaattttaattcatcttgcaagtttgatc 37605730  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 32135094 - 32135194
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttg 178  Q
    ||||||||| |||| |||||| |||||||| | |||||  ||| |||| |||  ||||||||||||||||||||||||| |  ||||| |||||||||||    
T  32135094 aatatatttccgtatgtcaaattctttaaaaacttttgcttctagctcagttgatagttaaatggagagttgtagacttgtagtttatgttgcaagtttg 32135193  T
Q  179 a 179  Q
    |    
T  32135194 a 32135194  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 32317770 - 32317848
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagactt 157  Q
    |||||||||| | |||||||  | |||||||||||||  || | |||||||||||||||||||| ||||||||| ||||    
T  32317770 aatatatttttgcaagtcaatttttttaaacatttttccgtttagctcggttagtagttaaatgaagagttgtaaactt 32317848  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 31169162 - 31169210
Alignment:
Q  133 tagttaaatggagagttgtagacttttgatttatattgcaagtttgatc 181  Q
    |||||||||||||||||||||| ||||  || || ||||||||||||||    
T  31169162 tagttaaatggagagttgtagatttttagttcatgttgcaagtttgatc 31169210  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 52879107 - 52878993
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacattttt-gtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagttt 177  Q
    |||||||||| |||||||||| |||||||| |||||| | | || | ||| ||| |||||||||||||||  | ||||||||  || || ||||||||||    
T  52879107 aatatatttttgtaagtcaaattctttaaatattttttgcgcctagatcgattactagttaaatggagag--gcagacttttagttcatgttgcaagttt 52879010  T
Q  178 gatcttaaaagtagcta 194  Q
    ||| ||||| |||||||    
T  52879009 gatgttaaaggtagcta 52878993  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 9021577 - 9021696
Alignment:
Q  79 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttg 178  Q
    |||||| ||| |||||||||| |||||||||| |||| ||||| ||||| ||  |  |||||| |||||||||||| || |  || || |||||||||||    
T  9021577 aatataattttgtaagtcaaattctttaaacagttttatgtctggctcgattgttcattaaatagagagttgtagatttatagttcatgttgcaagtttg 9021676  T
Q  179 atcttaaaagtagctatttt 198  Q
    |||  |||  ||||||||||    
T  9021677 atcccaaagatagctatttt 9021696  T

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