View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_4 (Length: 460)
Name: NF6199_low_4
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 53805211 - 53805635
Alignment:
| Q |
17 |
ttctaactccggtaactttttctccaaaattgaactctcttcttttaaattagcttccttatttttcccttctccgttttctgtctcactcacgttaact |
116 |
Q |
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| T |
53805211 |
ttctaactccggtaactttttctccaaaattgaactctcttctttcaaattagcttccttatttttcccttctccgttttctgtctcactcacgttaact |
53805310 |
T |
|
| Q |
117 |
ccgttagatttaacacactcacttttctgagtcacgtgaccgttaacnnnnnnnnnnnnnnnnnnnnnnnnatccgttatgttggtgtcagtgtaaccgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
53805311 |
ccgttagatttaacacactcacttttctgagtcacgtgaccgttaaccttttccttttccttttctttttcatccgttatgctggtgtcagtgtaaccgt |
53805410 |
T |
|
| Q |
217 |
ccccaccgtgactgtaacgtactttgaatttctcgtacggttcaaagaagtccaaaaattcccaagcagagttgctcggaggaggcggtgacggcggatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805411 |
ccccaccgtgactgtaacgtactttgaatttctcgtacggttcaaagaagtccaaaaattcccaagcagagttgctcggaggaggcggtgacggcggatt |
53805510 |
T |
|
| Q |
317 |
taaaccggaaaagttttcggtggtattcaacggaggcggaggagaataggaatcgtagataggtttgacgtaggtcatgaaagtcacattatcaggaact |
416 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805511 |
taaaccggaaaagtttccggtggtattcgacggaggcggaggagaataggaatcgtagataggtttgacgtaggtcatgaaagtcacattatcaggaact |
53805610 |
T |
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| Q |
417 |
gaggataaaacggtgtcgtggtgga |
441 |
Q |
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| T |
53805611 |
gaggataaaacggtgtcgtggtgga |
53805635 |
T |
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