View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_low_6 (Length: 402)
Name: NF6199_low_6
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 42467900 - 42467532
Alignment:
| Q |
16 |
caaaacttacggtgtttaatataaaattaattcagtgaccgtgcattacacaatcattcaattagcattgttttcgcaatgtcacttaattaccaaaatg |
115 |
Q |
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| T |
42467900 |
caaaacttacggtgtttaatataaaattaattcagtgactgtgcattacacaatcattcaattagcattgttttcacaatgtcacttaattaccaaaatg |
42467801 |
T |
|
| Q |
116 |
acattttattttatcactaagaattgaactgggttctctaaggttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatcaggc |
215 |
Q |
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||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42467800 |
acattttatttcatcattaagaattgaactaggttctctaaagttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatctggc |
42467701 |
T |
|
| Q |
216 |
ttgcatgtgacaaatcaaattgtatttagcagaaataaggaattaatcctaattatgacgagtagcaaaagttatgcttatctnnnnnnntcttcactgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
42467700 |
ttgcatgtgacaaatcaaattgtatttagcagaaatgaggaattaatcctaattatgacgagtagcaaaagttatgcttatctaaaaaaatcttcattgt |
42467601 |
T |
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| Q |
316 |
tcatctatggttattgaataatgaataaacnnnnnnnttgaaatatggggctagacctggaaaaaacca |
384 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42467600 |
tcatctatggttattgaataatgaataaacaaaaaaattgaaatatggggctagacctggaaaaaacca |
42467532 |
T |
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