View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6199_low_9 (Length: 389)

Name: NF6199_low_9
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6199_low_9
NF6199_low_9
[»] chr4 (6 HSPs)
chr4 (13-371)||(39581511-39581869)
chr4 (109-341)||(39576983-39577217)
chr4 (275-371)||(39571775-39571871)
chr4 (282-338)||(39582234-39582290)
chr4 (225-283)||(39513124-39513182)
chr4 (13-53)||(39525432-39525472)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 39581869 - 39581511
Alignment:
Q  13 tcatcagttgtggataagatatcaacgttactgatactgaacgtgttatatataaattaattatattacctaaaaacatatattgtctattggaaccaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581869 tcatcagttgtggataagatatcaacgttactgatactgaacgtgttatatataaattaattatattacctaaaaacatatattgtctattggaaccaca 39581770  T
Q  113 aatttctgatcaatttccattataagaacgtcgcgacaaatcatactaccaatttggacctcatgaatttccatggccctggaaagagatatttagactt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581769 aatttctgatcaatttccattataagaacgtcgcgacaaatcatactaccaatttggacctcatgaatttccatggccctggaaagagatatttagactt 39581670  T
Q  213 tggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatttgaataaataaataaattattataataagtgcgtcgaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581669 tggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatttgaataaataaataaattattataataagtgcgtcgaaaa 39581570  T
Q  313 tccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaat 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581569 tccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaat 39581511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 39577217 - 39576983
Alignment:
Q  109 cacaaatttctgatcaatttccattataagaacgtcgcgacaaatcatactaccaatttggacctcatgaa--tttccatggccctggaaagagatattt 206  Q
    ||||||||||||||| ||| |||||| ||||||||||  |||| ||||||||||| |||||||||||||||  ||| |||| ||||  || | | || ||    
T  39577217 cacaaatttctgatctatt-ccattacaagaacgtcggaacaagtcatactaccagtttggacctcatgaaaattttcatg-ccctccaagg-gttactt 39577121  T
Q  207 agactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatt----tgaataaataaataaattattataataagt 302  Q
    ||||| | |||||||| |||||||  |||||||||| | |||||||||||||| |||| |||||||    |||| ||||||||||||||||||||||| |    
T  39577120 agactctagtgcctttccattttgt-tgcattattagctgcttcttaattcattctccgcagcattgaattgaacaaataaataaattattataataaat 39577022  T
Q  303 gcgtcgaaaatccaaaccaaccaatcatgttttaacgta 341  Q
    |  || ||||||| ||| ||||||||| || ||||||||    
T  39577021 gtatctaaaatcctaactaaccaatcacgtcttaacgta 39576983  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 371
Target Start/End: Complemental strand, 39571871 - 39571775
Alignment:
Q  275 aataaataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaat 371  Q
    |||||||||| ||||||||||| |||||||||| |||| | |||| |||||||||  ||| |||||||||||||||| |||||||||||||||||||    
T  39571871 aataaataaacaaattattatattaagtgcgtctaaaaccaaaactaaccaatcacatttgaacgtacagggaactttcatttttcatgtctcaaat 39571775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 39582290 - 39582234
Alignment:
Q  282 aaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaac 338  Q
    ||||||||||||||| ||||||| || | ||||||||||||||||||| ||||||||    
T  39582290 aaataaattattatattaagtgcatctataatccaaaccaaccaatcacgttttaac 39582234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 39513182 - 39513124
Alignment:
Q  225 attttggctgcattattatcagcttcttaattcatcctccacagcatttgaataaataa 283  Q
    |||||||||||||||||| |||| |||||||||||  ||  |||||||| |||||||||    
T  39513182 attttggctgcattattagcagcctcttaattcattttcagcagcatttaaataaataa 39513124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 39525472 - 39525432
Alignment:
Q  13 tcatcagttgtggataagatatcaacgttactgatactgaa 53  Q
    ||||||||||||||| ||||| ||||||||||| |||||||    
T  39525472 tcatcagttgtggatcagatagcaacgttactgttactgaa 39525432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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