View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6200_high_3 (Length: 251)
Name: NF6200_high_3
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6200_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4863237 - 4863005
Alignment:
| Q |
1 |
cttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagta |
100 |
Q |
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| T |
4863237 |
cttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagta |
4863138 |
T |
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| Q |
101 |
acgaaggaactcaagcacatggttgaagttgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttc |
200 |
Q |
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| T |
4863137 |
acgaaggaactcaagcacatggttgaagttgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttc |
4863038 |
T |
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| Q |
201 |
ttttgtgactcataacggctcaaaggagctact |
233 |
Q |
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| T |
4863037 |
ttttgtgactcataacggctcaaaggagctact |
4863005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 32002186 - 32002385
Alignment:
| Q |
12 |
ggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaact |
111 |
Q |
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| T |
32002186 |
ggacaagtacatggtccaggtggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaatt |
32002285 |
T |
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| Q |
112 |
caagcacatggttgaagttgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttcttttgtgactc |
211 |
Q |
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| T |
32002286 |
caagaacatggtttgaattacaatttgatagtgccactggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttgtgactc |
32002385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 35814655 - 35814564
Alignment:
| Q |
39 |
ggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagtt |
130 |
Q |
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| T |
35814655 |
ggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagtt |
35814564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 30942060 - 30941963
Alignment:
| Q |
12 |
ggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaa |
109 |
Q |
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| T |
30942060 |
ggacaagtacaaggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaa |
30941963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 37975082 - 37975030
Alignment:
| Q |
69 |
tgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatg |
121 |
Q |
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| T |
37975082 |
tgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatg |
37975030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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