View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6200_high_4 (Length: 247)
Name: NF6200_high_4
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6200_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 51574713 - 51574519
Alignment:
| Q |
35 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaataattgttaaaactataaattgaactc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51574713 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaagaattgttaaaactataaattgaactt |
51574614 |
T |
|
| Q |
135 |
agatttctcttaaatgtttcatccttagttttttcttttaattatcccattttgcatttgattggctacatatactcgtgtcatcatgtagagta |
229 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51574613 |
agatttctgttgaaagtttcatccttagttttttctcttaattatcccattttgcatttgattggctacatatactcttgtcatcatgtagagta |
51574519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University