View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6200_low_1 (Length: 425)
Name: NF6200_low_1
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6200_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 4863401 - 4863815
Alignment:
| Q |
1 |
aaagaagaaatggagtcaacttaatggcacttataatactacgtctaagtctttcaacaaattagcttttttatattcatggtaannnnnnnn-atcaaa |
99 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||| || | ||||||||||| |||||| |
|
|
| T |
4863401 |
aaagaagaagaggagtcaacttaagggcactcataatactacttctaagtctttcaaccaattagcttcttgagattcatggtaaattttttttatcaaa |
4863500 |
T |
|
| Q |
100 |
ttaattaatatttgtatgccttaattagtttgaatttaaatgcaattagcttgaatttaattaagttatatcaggatcaagataaggtatggttgaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863501 |
ttaattaatatttgtatgccttaattagtttgaatttaaatgcaattagcttgaatttaattaagttatatcaggatcaagataaggtatggttgaaaat |
4863600 |
T |
|
| Q |
200 |
tttgaagccgnnnnnnnaaacttgagggtaa-nnnnnnngccatatatatggagatacacagatattggagtatagaaaaccctagaagcagaatacaaa |
298 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863601 |
tttgaagccgtttttttaaacttgagggtaattttttttgcc----atatggagatacacagatattggagtatagaaaaccctagaagcagaatacaaa |
4863696 |
T |
|
| Q |
299 |
ccctaaaattttatttnnnnnnnnnnnngaatacaaaccctaaattcccattgtcaattgagaaaatataaatttctagtgtaagaataatttattggtt |
398 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4863697 |
ccctaaaattttatttaaaaaacaaaaggaatacaaaccctaaattcccattgtcaattgagaaaatataaatttctagagtaagaataatttattggtt |
4863796 |
T |
|
| Q |
399 |
aaaaaattgtgagaataat |
417 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
4863797 |
aaaaatttgtgagaataat |
4863815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University