View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6200_low_2 (Length: 337)
Name: NF6200_low_2
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6200_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 29098097 - 29098386
Alignment:
| Q |
13 |
aatataaaaaacaataataaatatatatgtccatgatttcgacttcctcaataatatggcaccattttcaagtacaaaattctagaataaactttcattc |
112 |
Q |
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| T |
29098097 |
aatataaaaaacaataataaatatatatgtccatgatttcgacttcctcaataatatggcaccatcttcaagtacaaaattctagaataaactttcattc |
29098196 |
T |
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| Q |
113 |
ttccacaaagaaaattcatttttagttgaacctttcaacacacttcataccaaatttcaactatttgataaaaatacacgaacaatttctataatctaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29098197 |
ttccacaaagaaaattcatttttagttgaacctttcaacacacttcataccaaatttcaactatttgataaaaatacacgaacaatttctataacctaac |
29098296 |
T |
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| Q |
213 |
caattttttataggaactgtaaacaaggaaaaccaacacgatgcaaatagagggaaaagacccgttcaacagttcgagcgaagacatgtt |
302 |
Q |
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| T |
29098297 |
caattttttataggaactgtaaacaaggaaaaacaacacgatgcaaatagagggaaaagacccgttcaacagttcgagcgaagacatgtt |
29098386 |
T |
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