View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6200_low_6 (Length: 244)
Name: NF6200_low_6
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6200_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 8205171 - 8205408
Alignment:
| Q |
7 |
aatatcaaattgagaaatcatagcttgacactcatctatacttctacactcacccaatcttccaagcattctctttagactctttggtgtgatgcaacca |
106 |
Q |
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| T |
8205171 |
aatatcaaattgagaaatcatagcttgacattcatctacacttctacactcacccaatcttccaagcattctctttagactctttggtgtgatgcaacca |
8205270 |
T |
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| Q |
107 |
catccctccatttcatacatcttaaaagcctctcttaggtcatttactttctcttcctctttccctccctctacaaacttcacaaaatcatccaacccaa |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205271 |
catccttccatttcatacatcttaaaagcctctcttaggtcatttactttctcttcctctttccctccctctacaaacttcacaaaatcatccaacccaa |
8205370 |
T |
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| Q |
207 |
tcaacccatcaccgtccgagtcgagaagctcaaccgcc |
244 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
8205371 |
tcaacccatccccgtccgagtcgagaagctcaaccgcc |
8205408 |
T |
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