View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6200_low_8 (Length: 228)

Name: NF6200_low_8
Description: NF6200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6200_low_8
NF6200_low_8
[»] chr4 (14 HSPs)
chr4 (44-228)||(2381599-2381783)
chr4 (50-228)||(2391227-2391405)
chr4 (51-228)||(2380335-2380512)
chr4 (66-190)||(2547222-2547346)
chr4 (65-176)||(2367923-2368034)
chr4 (51-224)||(2382713-2382877)
chr4 (66-186)||(2533991-2534111)
chr4 (66-197)||(2621402-2621533)
chr4 (135-177)||(12124592-12124634)
chr4 (130-182)||(2361217-2361269)
chr4 (145-182)||(2486064-2486101)
chr4 (137-192)||(2467294-2467349)
chr4 (134-177)||(12126647-12126690)
chr4 (137-177)||(2373488-2373528)
[»] chr5 (1 HSPs)
chr5 (130-189)||(41900496-41900555)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 2381783 - 2381599
Alignment:
Q  44 aatagcctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2381783 aatagcctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagt 2381684  T
Q  144 aagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagggatttttaaaaagttggagaaaatgagcgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2381683 aagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttaaaaaacttggagaaaatgagcgat 2381599  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 2391405 - 2391227
Alignment:
Q  50 ctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagaga 149  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||  || ||||||||||||||||||    
T  2391405 ctgtttccttgagaacaagttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagaga 2391306  T
Q  150 ggtcaaatttttcatctttttggacaaagctcggaacccatctttagggatttttaaaaagttggagaaaatgagcgat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| | ||||||||||    
T  2391305 ggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttgtagaagttggaaagaatgagcgat 2391227  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 2380512 - 2380335
Alignment:
Q  51 tgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagag 150  Q
    ||||| ||||||||||||| |||| ||| |||||||||||||  |||||||  | | ||||||||| |||||||||||||||| | ||||  | | |||     
T  2380512 tgtttccttgagaacgagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaa 2380413  T
Q  151 gtcaaatttttcatctttttggacaaagctcggaacccatctttagggatttttaaaaagttggagaaaatgagcgat 228  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| |||||||| || | |||||||| ||||||||||    
T  2380412 gtcaaatttttcatctttttggacaaaggtcgcaatccatttttcgggattttgaagaggttggagagaatgagcgat 2380335  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 2547222 - 2547346
Alignment:
Q  66 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagaggtcaaatttttcatc 165  Q
    ||||||||| ||||||||||| |||||  ||||||| || ||||| |||||| ||||  | || |||| ||||||| | ||||| |||||||||||||||    
T  2547222 gagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatc 2547321  T
Q  166 tttttggacaaagctcggaacccat 190  Q
    ||||  ||||||||||| |||||||    
T  2547322 ttttcagacaaagctcgcaacccat 2547346  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 2368034 - 2367923
Alignment:
Q  65 cgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagaggtcaaatttttcat 164  Q
    |||||||||||||||||||||| |||||  ||||||| |||| |||  ||||||  || | | | ||| |||||||||||||||||||||| ||||||||    
T  2368034 cgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtgaatactaatcattccggaacaagtaagagaggtcaagtttttcat 2367935  T
Q  165 ctttttggacaa 176  Q
    | ||||||||||    
T  2367934 ccttttggacaa 2367923  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 2382877 - 2382713
Alignment:
Q  51 tgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagag 150  Q
    ||||| ||||||||||||| | ||||||||||||||||||| | |||||||  ||| ||||||||         | ||||||| | ||||| | | |||     
T  2382877 tgtttccttgagaacgagtacatcgagtaaagggaagcaattggcaatgaaatagatatccttct---------acgtaattttgaaacaaatgaaagaa 2382787  T
Q  151 gtcaaatttttcatctttttggacaaagctcggaacccatctttagggatttttaaaaagttggagaaaatgag 224  Q
    ||||| |||||||||||||||||||||||||| || |||| | || ||||||| || | |||||||| ||||||    
T  2382786 gtcaattttttcatctttttggacaaagctcgcaatccatttatatggattttgaagaggttggagagaatgag 2382713  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 2533991 - 2534111
Alignment:
Q  66 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagaggtcaaatttttcatc 165  Q
    ||||||||| ||||||||||| |||||  |||| || |||| ||| |||||||||||  |  | ||||   ||||||| ||||| || ||||||||||||    
T  2533991 gagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatc 2534090  T
Q  166 tttttggacaaagctcggaac 186  Q
    || ||||||||||||||||||    
T  2534091 ttcttggacaaagctcggaac 2534111  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 2621533 - 2621402
Alignment:
Q  66 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcggaacaagtaagagaggtcaaatttttcatc 165  Q
    ||||||||||||||||||||| |||||  ||| ||| || | ||| ||||||  |||   | |||||  | ||||||| ||||| ||||||||||||||     
T  2621533 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcata 2621434  T
Q  166 tttttggacaaagctcggaacccatctttagg 197  Q
    |||||||| |||||||| ||||||||| ||||    
T  2621433 tttttggagaaagctcgcaacccatctgtagg 2621402  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 12124592 - 12124634
Alignment:
Q  135 ggaacaagtaagagaggtcaaatttttcatctttttggacaaa 177  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  12124592 ggaacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 2361269 - 2361217
Alignment:
Q  130 atttcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcg 182  Q
    |||| ||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  2361269 attttggaacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 2486064 - 2486101
Alignment:
Q  145 agagaggtcaaatttttcatctttttggacaaagctcg 182  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2486064 agagatgtcaaatttttcatctttttggacaaagctcg 2486101  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 2467294 - 2467349
Alignment:
Q  137 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatct 192  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatct 2467349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 12126647 - 12126690
Alignment:
Q  134 cggaacaagtaagagaggtcaaatttttcatctttttggacaaa 177  Q
    |||||||| | |||||||||||||||||||||| ||||||||||    
T  12126647 cggaacaaatgagagaggtcaaatttttcatctgtttggacaaa 12126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 2373528 - 2373488
Alignment:
Q  137 aacaagtaagagaggtcaaatttttcatctttttggacaaa 177  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  2373528 aacaagtgagagaggtcaaatatttcatcttttcggacaaa 2373488  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 41900555 - 41900496
Alignment:
Q  130 atttcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 189  Q
    |||||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  41900555 atttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

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