View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_high_1 (Length: 515)
Name: NF6202_high_1
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_high_1 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 227 - 503
Target Start/End: Original strand, 24620632 - 24620908
Alignment:
| Q |
227 |
caagttgcctagattccttactagtaacttgggatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaa |
326 |
Q |
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| T |
24620632 |
caagttgcctagattccttactagtaacttgtgatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaa |
24620731 |
T |
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| Q |
327 |
tatagacaagacacgtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaattacgtgcgttagtgtcgtatgttggaccttgaatttgat |
426 |
Q |
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| T |
24620732 |
taaagacaagacatgtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaattacgtgcgtcagtgtcgtatgttggaccttcaatttgat |
24620831 |
T |
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| Q |
427 |
gtgtggggctacataggtcaaatgtagcatgggttcctcgccagattttaatgaatgaagacctatttaaggttcat |
503 |
Q |
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| T |
24620832 |
gtatggggctacataggtcaaatgtagcatgggttcctcgccagatttaaatgaatgaagacctatttaaggttcat |
24620908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 4745673 - 4745607
Alignment:
| Q |
246 |
actagtaacttgggatgggaaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatg |
312 |
Q |
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| T |
4745673 |
actagtaacttgtgatgggaaaccgactacgaagtccctatttcaaggcattcttggtggtcaaatg |
4745607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 22571357 - 22571268
Alignment:
| Q |
57 |
atgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggtaagtttacttgatattggtttgaaact |
148 |
Q |
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| T |
22571357 |
atgtcacaagttttgaacccacaatattttatctgtttaatttatttggagttagatagaatcttaagtata--tgatattggtttgaaact |
22571268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 11806111 - 11805986
Alignment:
| Q |
23 |
ctccatgcaatattctttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggta |
122 |
Q |
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| T |
11806111 |
ctccatgcaatattcgttgttttggggataaaccataacaaaagttttaaacttaaaatgttataactgtttaatttctttgcatttagttagaataata |
11806012 |
T |
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| Q |
123 |
agtttacttgatattggtttgaaact |
148 |
Q |
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| T |
11806011 |
agtttacttgatattggtttgcaact |
11805986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 23690179 - 23690102
Alignment:
| Q |
39 |
ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga |
116 |
Q |
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| T |
23690179 |
ttgttttggtgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga |
23690102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 40445 - 40338
Alignment:
| Q |
39 |
ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggtaagtttacttgatattg |
138 |
Q |
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| T |
40445 |
ttgttttggtgacgaaccatgtcacaagttttgaacccactttattatatctgtttaatttctttggagttagatagagtcatagg--tacttggtattg |
40348 |
T |
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| Q |
139 |
gtttgaaact |
148 |
Q |
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| T |
40347 |
gtttgaaact |
40338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 2878358 - 2878435
Alignment:
| Q |
39 |
ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga |
116 |
Q |
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| T |
2878358 |
ttgttttggcgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga |
2878435 |
T |
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