View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_high_4 (Length: 411)
Name: NF6202_high_4
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_high_4 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 48421332 - 48421714
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaaaaatattcaaatatggttttttatcagattcctatttttg |
116 |
Q |
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| T |
48421332 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaaa--tattcaaatatggttttttatcagattcctatttttg |
48421429 |
T |
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| Q |
117 |
gattagaattatgtagagtgtgcacaataaatttgttacatggaggacgttctctagtgtatgcataagaggtaaagaactcttctaaatgtagtagcat |
216 |
Q |
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| T |
48421430 |
gattagaattatgtagagtgtgcacaataaatttgttacatgaaggacgttctctagtgtatgcataagaggtaaagaactcttctaaatgtagtagcat |
48421529 |
T |
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| Q |
217 |
ctatgcgaacttctctcttaagataatgtactatgtgccagagaaaaatatagcagaggactagagttacttctaatgtgttcattcgtaatttgttgtg |
316 |
Q |
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| T |
48421530 |
ctatgcgaacttctctcttaagataatgtactatgtgccagagaaaaatatagcagaggactagagttacttctaatgtgttcattcgtaatttgttgtg |
48421629 |
T |
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| Q |
317 |
tctttgggaattttctacttggagtatggtttggtttatacttcttcatatttgacatttgatattggtttcaacttgccctttg |
401 |
Q |
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| T |
48421630 |
tctttgggaattttctacttggagtatggtttggtttatacttcttcatatttgacatttgatattggtttcaacttgccctttg |
48421714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 46424074 - 46424014
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaaa |
77 |
Q |
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| T |
46424074 |
attatgtaattaaagtagtaaattatatcatcctattaattcactaatatcataaaagaaa |
46424014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 61545 - 61475
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaaaaatattcaaatat |
90 |
Q |
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| T |
61545 |
attatataattaaagtagtaatttatatcattctattatttcacaaat---atcataaaaaaatattcaaatat |
61475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 29718837 - 29718778
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaa |
76 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| |||||| |
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| T |
29718837 |
attatataattagagtagtaatttatatcatcttattagttcactaatatcataaaagaa |
29718778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 25329334 - 25329297
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctatta |
54 |
Q |
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| T |
25329334 |
attatataattagggtagtaatttatatcatcatatta |
25329297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 37464899 - 37464958
Alignment:
| Q |
17 |
attatataattagagtagtaatttatatcatcctattaattcacaaataccatcaaagaa |
76 |
Q |
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||||||||||| ||||| |||||| || |||||||||| ||||||||| |||||||||| |
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| T |
37464899 |
attatataattcgagtaataatttctagcatcctattagatcacaaatatcatcaaagaa |
37464958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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