View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6202_low_10 (Length: 300)

Name: NF6202_low_10
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6202_low_10
NF6202_low_10
[»] chr8 (1 HSPs)
chr8 (4-300)||(1004624-1004920)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 1004920 - 1004624
Alignment:
Q  4 atgtcgaataaaatcaaagtagccannnnnnnatataaagaagtaaaaacttgtatttggatggctgaggtgtggcagttgtctttgatcagaaaacttt 103  Q
    ||||| |||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1004920 atgtcaaataaaatcaaagtagccatttttttatgtaaagaagtaaaaacttgtatttggatggctgaggtgtggcagttgtctctgatcagaaaacttt 1004821  T
Q  104 ccagtgattattataacttagaagtggattcacaatcagaactcaatggtcacatagaagtagcaacaacgaaggagacgagnnnnnnnnnnnnnnnnaa 203  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                ||    
T  1004820 ccagtgattattataactttgaagtggattcacaatcagaactcaatggtcacatagaagtagcaacaaagaaggagacgagttttttattttattttaa 1004721  T
Q  204 gtcttgaataaaacnnnnnnnnggtgtgttgttaaaccagtggaaccggttatcctgtacagggtctttaaaaatgaatgacgtggaccaatggaac 300  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1004720 gtcttgaataaaacaaaaaaaaggtgtgttgttaaaccagtggaaccggttatcctgtacagggtctttaaaaatgaatgacgtggaccaatggaac 1004624  T

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