View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_low_12 (Length: 256)
Name: NF6202_low_12
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 45179562 - 45179315
Alignment:
| Q |
11 |
cacagacgaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgcaatttcactttatgtaattactgagttc |
110 |
Q |
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| T |
45179562 |
cacagaagaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgcaatttcactttatgtaattaccgagttc |
45179463 |
T |
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| Q |
111 |
atatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagag--acctccagggtataatgtgacagatgctaaaacgtcaggc |
208 |
Q |
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| T |
45179462 |
atatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacacctccagggtataatgtgacagatgctaaaacgtcaggc |
45179363 |
T |
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| Q |
209 |
gtgcaaattaaatggactctcgaagccaaactacattccacacagctt |
256 |
Q |
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| T |
45179362 |
gtgcaaattaaatggactctcgaagccaaactacattccacacagctt |
45179315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 45172630 - 45172507
Alignment:
| Q |
122 |
aatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaat |
221 |
Q |
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| T |
45172630 |
aatgaaaacaacgatattgaaatgccaactggatcagatcttcagagccctccaggttctaatgtgacagatgctgaaaactcaggcgctca----aaat |
45172535 |
T |
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| Q |
222 |
ggactctcgaagccaaactacattccac |
249 |
Q |
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| T |
45172534 |
ggactcgcaaagccaaactacagtccac |
45172507 |
T |
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