View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6202_low_14 (Length: 237)
Name: NF6202_low_14
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_14 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold1160 (1 HSPs) |
| | |
|
| [»] scaffold0285 (1 HSPs) |
| | |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 6472554 - 6472335
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6472554 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
6472455 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6472454 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
6472355 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
6472354 |
ccatccatctctctccacaa |
6472335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 35013285 - 35013065
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35013285 |
aatttcatttccttttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagcgaaagcaaaaccaccgaacaacatccaccaccaca |
35013186 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac--cccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013185 |
ccactgccggcgggccgcgaccactcttctccttctccatccatcaccgccgcaccccccctcaatcttctgtattgattctttagtttagagagctatc |
35013086 |
T |
|
| Q |
214 |
tccattcatctctctcgacaa |
234 |
Q |
| |
|
||||| |||||||||| |||| |
|
|
| T |
35013085 |
tccatccatctctctccacaa |
35013065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 9371629 - 9371835
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9371629 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttc-------------tcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
9371715 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9371716 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
9371815 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
9371816 |
ccatccatctctctccacaa |
9371835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 21358302 - 21358172
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcg---ttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccacc |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21358302 |
aatttcatttccttttcccctttctctttcatctgatgcgcggcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccacc |
21358203 |
T |
|
| Q |
113 |
acaccactgccggcgagccgcgaccactctt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21358202 |
acaccactgccggcgagccgcgaccactctt |
21358172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 21358168 - 21358113
Alignment:
| Q |
179 |
tcttctgtattgattctttagtttagagagctatctccattcatctctctcgacaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21358168 |
tcttctgtattgattctttagtttagagagctatctccatccatctctctccacaa |
21358113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 10572512 - 10572731
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10572512 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
10572611 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10572612 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
10572711 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
10572712 |
ccatccatctctctccacaa |
10572731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 3173973 - 3174192
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173973 |
aatttcatttcctcttcccctttctctttcatctgatgcgcattcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
3174072 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3174073 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
3174172 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
3174173 |
ccatccatctctctccacaa |
3174192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 32863458 - 32863667
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32863458 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcct-ttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
32863556 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32863557 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
32863656 |
T |
|
| Q |
215 |
ccattcatctc |
225 |
Q |
| |
|
|||| |||||| |
|
|
| T |
32863657 |
ccatccatctc |
32863667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 18739581 - 18739525
Alignment:
| Q |
114 |
caccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
18739581 |
caccaccgccggtgagccgcgagaccactctcctctttctccatccatcaccgccgc |
18739525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 21604235 - 21604454
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21604235 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
21604334 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21604335 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
21604434 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
21604435 |
ccatccatctctctccacaa |
21604454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 8433290 - 8433071
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8433290 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
8433191 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8433190 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagaaagctatct |
8433091 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
8433090 |
ccatccatctctctccacaa |
8433071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 46164676 - 46164457
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46164676 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaactaccgaacaacatccaccaccaca |
46164577 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46164576 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctctatcttctatattgattctttagtttagagagctatct |
46164477 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
46164476 |
ccatccatctctctccacaa |
46164457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 47825720 - 47825936
Alignment:
| Q |
17 |
atttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccacac |
116 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47825720 |
atttcatctcct-ttctcctttctctttcatctgatgcgcgttcctcttttttcttctccaagccaaagcaaatccaccgaacaacatccaccaccacac |
47825818 |
T |
|
| Q |
117 |
cactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcaccccctcaatcttctgtattgattctttagtttagagagctatctcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47825819 |
cactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcaccccctcaatcttctgtattgattctttagtttagagagctatctcc |
47825918 |
T |
|
| Q |
217 |
attcatctctctcgacaa |
234 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
47825919 |
atccatctctctccacaa |
47825936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 54785486 - 54785279
Alignment:
| Q |
25 |
tcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccacaccactgccg |
124 |
Q |
| |
|
||||||| | |||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
54785486 |
tcctctttctctttctctttcatctg---cgcgtttctcttttttcttttcccagccaaagcaaatccaccgaacaacatccaccaccacaccaccgccg |
54785390 |
T |
|
| Q |
125 |
gcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatctccattcatc |
223 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
54785389 |
gcgagccgcaaccactctcctccttctccatccatcaccgccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatc |
54785290 |
T |
|
| Q |
224 |
tctctcgacaa |
234 |
Q |
| |
|
|||||| |||| |
|
|
| T |
54785289 |
tctctccacaa |
54785279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 25808948 - 25808838
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25808948 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
25808849 |
T |
|
| Q |
116 |
ccactgccggc |
126 |
Q |
| |
|
||||||||||| |
|
|
| T |
25808848 |
ccactgccggc |
25808838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 21355773 - 21355830
Alignment:
| Q |
111 |
ccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21355773 |
ccacaccaccgcgggtgagccgcgaccactctcctccttctccatccatcaccgccgc |
21355830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 23218421 - 23218367
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
23218421 |
caccaccgccggtgagccgcgaccactctcctccttctccatccatcactgccgc |
23218367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 13740440 - 13740399
Alignment:
| Q |
127 |
gagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13740440 |
gagccgcgaccactctcctccttctccatccatcaccgccgc |
13740399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 45143890 - 45143942
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgcc |
166 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
45143890 |
caccaccgccggtgagccgcgatcactctcctccttctccatccatcaccgcc |
45143942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 45152659 - 45152711
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgcc |
166 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
45152659 |
caccaccgccggtgagccgcgatcactctcctccttctccatccatcaccgcc |
45152711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 38115267 - 38115300
Alignment:
| Q |
18 |
tttcatttcctcttcccctttctctttcatctga |
51 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
38115267 |
tttcatttcctctttccctttctctttcatctga |
38115300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 29599561 - 29599342
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29599561 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
29599462 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29599461 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
29599362 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
29599361 |
ccatccatctctctccacaa |
29599342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 324488 - 324708
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
324488 |
aatttcatttcttcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
324587 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
324588 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
324687 |
T |
|
| Q |
215 |
ccattcatctctctcgacaag |
235 |
Q |
| |
|
|||| |||||||||| ||||| |
|
|
| T |
324688 |
ccatccatctctctccacaag |
324708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 48184048 - 48184267
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48184048 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
48184147 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48184148 |
ccactgccggcaagccgcgaccactcttcttcttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatct |
48184247 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
48184248 |
ccatccatctctctccacaa |
48184267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 26014335 - 26014506
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26014335 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcatctcccagccaaagcaaaaccaccgaacaatatccaccaccaca |
26014434 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgt |
186 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26014435 |
ccactgctggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgt |
26014506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 26354813 - 26355022
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaacc-accgaacaacatccaccaccac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||| | |
|
|
| T |
26354813 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcgtcttttttcttctcccagccaaagcaaatccgaccgaacaatatccaccaccgc |
26354912 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26354913 |
accaccgccggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctatagttcagagagctatc |
26355012 |
T |
|
| Q |
214 |
tccattcatc |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
26355013 |
tccatccatc |
26355022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 16764776 - 16764636
Alignment:
| Q |
69 |
tcttctcccagccaaagcaaaaccaccgaaca--acatccaccaccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgcc |
166 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| ||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
16764776 |
tcttctcccaaccaaagcaag-cgaccgaacattacatccaccaccacaccaccgctggtgagccgcgaccactctcctccttctccatccatcaccact |
16764678 |
T |
|
| Q |
167 |
gca-ccccctcaatcttctgtattgattctttagtttagaga |
207 |
Q |
| |
|
||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
16764677 |
gcatactcctccatcttctgttttgattctttagtttagaga |
16764636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 6165255 - 6165148
Alignment:
| Q |
101 |
acatccaccaccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttag |
199 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||| ||| | |||| ||||||||| | ||||||| || |
|
|
| T |
6165255 |
acatccaccaccacaccaccgctggtgagccgcgaccactctcctccttctccatccatcaccgctgcatactcctccatcttctgtttcgattcttcag |
6165156 |
T |
|
| Q |
200 |
tttagaga |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
6165155 |
tttagaga |
6165148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 10801856 - 10801668
Alignment:
| Q |
19 |
ttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaaca--acatccaccaccacac |
116 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| | ||| ||| | ||||||||||| ||||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
10801856 |
ttcatttcttctttccctttctctttcatctga-gaacgtga-tctctattcttctcccaaccaaagcaag-ccacctaacattacatccaccaccacac |
10801760 |
T |
|
| Q |
117 |
cactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagaga |
207 |
Q |
| |
|
||| || | |||||||||||||||| |||||||||||||||||||||| ||| | ||| ||||||||| | ||||||| |||||||||| |
|
|
| T |
10801759 |
caccgcttgtgagccgcgaccactctcctccttctccatccatcaccgctgcatacttctccatcttctgtttcgattcttcagtttagaga |
10801668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 22432602 - 22432382
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctcttt-catctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22432602 |
aatttcatttcctcttcccctttctcttttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccac |
22432503 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22432502 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatc |
22432403 |
T |
|
| Q |
214 |
tccattcatctctctcgacaa |
234 |
Q |
| |
|
||||| |||||||||| |||| |
|
|
| T |
22432402 |
tccatccatctctctccacaa |
22432382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 27576570 - 27576791
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgc--gttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccacca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27576570 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccacca |
27576669 |
T |
|
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27576670 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctat |
27576769 |
T |
|
| Q |
213 |
ctccattcatctctctcgacaa |
234 |
Q |
| |
|
|||||| |||||||||| |||| |
|
|
| T |
27576770 |
ctccatccatctctctccacaa |
27576791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 234
Target Start/End: Complemental strand, 29182873 - 29182666
Alignment:
| Q |
28 |
tcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccacaccactgccggcg |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29182873 |
tcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccacaccactgctggcg |
29182774 |
T |
|
| Q |
128 |
agccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatctccattcatctct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29182773 |
agccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctct |
29182674 |
T |
|
| Q |
227 |
ctcgacaa |
234 |
Q |
| |
|
||| |||| |
|
|
| T |
29182673 |
ctccacaa |
29182666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 18068389 - 18068597
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18068389 |
aatttcatttcctcttcccctttctctttcatctg-----cgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
18068483 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18068484 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcatcctcctcaatcttctgtattgattctttagtttagagagctatct |
18068583 |
T |
|
| Q |
215 |
ccattcatctctct |
228 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
18068584 |
ccatccatctctct |
18068597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 774992 - 774783
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaacc-accgaacaacatccaccaccac |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
774992 |
aatttcatttcctcttcccctttcccttcaatctgatgcgcgttcctcttttttcttctcccagccaaagcaaatccgaccgaacaacatccaccaccac |
774893 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
774892 |
accaccgccggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatc |
774793 |
T |
|
| Q |
214 |
tccattcatc |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
774792 |
tccatccatc |
774783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 780646 - 780437
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaacc-accgaacaacatccaccaccac |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
780646 |
aatttcatttcctcttcccctttcccttcaatctgatgcgcgttcctcttttttcttctcccagccaaagcaaatccgaccgaacaacatccaccaccac |
780547 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
780546 |
accaccgccggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatc |
780447 |
T |
|
| Q |
214 |
tccattcatc |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
780446 |
tccatccatc |
780437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 787922 - 787851
Alignment:
| Q |
18 |
tttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaa |
89 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
787922 |
tttcatttcctcttcccctttcactttcatctgatgcgcgttcctcctttttcttctcccagccaaagcaaa |
787851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 22014656 - 22014845
Alignment:
| Q |
18 |
tttcatttcctcttcccctttctctttcatctgatg-cgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaaca--acatccaccaccac |
114 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||| ||| | | ||||||||||| ||||||||| | |||||||| |||||||||||||| |
|
|
| T |
22014656 |
tttcatttcttctttccctttctctttcatctgagaacgcattc---tctattcttctcccaaccaaagcaag-cgaccgaacagtacatccaccaccac |
22014751 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagaga |
207 |
Q |
| |
|
||||| || || |||||||||||||||| |||||||||||||||||||||| ||| | |||| ||||||||| | |||| || |||||||||| |
|
|
| T |
22014752 |
accaccgctggtgagccgcgaccactctcctccttctccatccatcaccgctgcatactcctccatcttctgtttcgattattcagtttagaga |
22014845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 6786260 - 6786409
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaacc-accgaacaacatccaccaccac |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| | |||||| |||||||||||||| || || || |||||| ||||||||||| |
|
|
| T |
6786260 |
aatttcattttctcttcccctttctctttcatctgt---gcgtaagtttttttt-ttctcccagccaaattgaatccgactgaacaatatccaccaccaa |
6786355 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6786356 |
accaccgccgtcgaaccgcgaccactctcctccttctccatccatcaccgccgc |
6786409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 43916025 - 43916117
Alignment:
| Q |
129 |
gccgcgaccactct--tctccttctccatccatcaccgccgcaccc-cctcaatcttctgtattgattctttagtttagagagctatctccat |
218 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||| || |||| || |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
43916025 |
gccgcgaccactctcatttccttctccatccatcaccgtcgcatcctcctctattttctgtgttgattcttcagtttagagagctatctccat |
43916117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 1668023 - 1668077
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1668023 |
caccaccgccggtgagccgcgaccactctcctccttctccatccatcaccgccgc |
1668077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 16658738 - 16658792
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16658738 |
caccaccgccggtgagccgcgaccactctcctccttctccatccatcaccgccgc |
16658792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 38521424 - 38521370
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38521424 |
caccaccgccggtgagccgcgaccactcttctccttctccatccatcactgccgc |
38521370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 9456223 - 9456442
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9456223 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
9456322 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatct |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9456323 |
ccactgccggcgagctgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagacagctatct |
9456422 |
T |
|
| Q |
215 |
ccattcatctctctcgacaa |
234 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
9456423 |
ccatccatctctctccacaa |
9456442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 2339015 - 2338961
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2339015 |
caccaccgccggtgagccgcgaccactctcctccttctccatccatcactgccgc |
2338961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 52893349 - 52893403
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
52893349 |
caccaccgccggtgagccgcgatcactctcctccttctccatccatcaccgccgc |
52893403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 25697878 - 25697658
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctcttt-catctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25697878 |
aatttcatttcctcttcccctttctcttttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccac |
25697779 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgcac-cccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25697778 |
accactgctggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtatagattctttagtttagagagctatc |
25697679 |
T |
|
| Q |
214 |
tccattcatctctctcgacaa |
234 |
Q |
| |
|
||||| |||||||||| |||| |
|
|
| T |
25697678 |
tccatccatctctctccacaa |
25697658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 3935573 - 3935519
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3935573 |
caccaccgccggtgagccgcgaccactctcctccttctccatccatcaccgccgc |
3935519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 38978567 - 38978520
Alignment:
| Q |
121 |
gccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
38978567 |
gccggtgagccgcgatcactctcctccttctccatccatcaccgccgc |
38978520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38978660 - 38978627
Alignment:
| Q |
18 |
tttcatttcctcttcccctttctctttcatctga |
51 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
38978660 |
tttcatttcctcttcccgtttctctttcatctga |
38978627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 16497487 - 16497344
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16497487 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaaccaccgaacaacatccaccaccaca |
16497388 |
T |
|
| Q |
116 |
ccactgccggcgagccgcgaccactcttctccttctccatccat |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16497387 |
ccactgccggcgagccgcgaccactcttctccttctccatccat |
16497344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 32397041 - 32397249
Alignment:
| Q |
16 |
aatttcatttcctcttcccctttctctttcatctgatgcgcgttcctcttttttcttctcccagccaaagcaaaacc-accgaacaacatccaccaccac |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
32397041 |
aatttcatttcctcttcccctt-ctctttcatctgatgcgcgttactcttttttcttctcccagccaaagcaaatccgaccgaacaacatccaccaccac |
32397139 |
T |
|
| Q |
115 |
accactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatc |
213 |
Q |
| |
|
||||| |||||||| || |||||||||| ||||| |||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32397140 |
accaccgccggcgatccccgaccactctcctcctgctccatccatcaccgccgcatcctcctccatcttcttaattgattctttagtttagagagctatc |
32397239 |
T |
|
| Q |
214 |
tccattcatc |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
32397240 |
tccatccatc |
32397249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 9302935 - 9303021
Alignment:
| Q |
133 |
cgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttagtttagagagctatctccat |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| || ||| ||||||| |||||||||| |||| |||||| ||||||||| |
|
|
| T |
9302935 |
cgaccactctcctccttctccatccatcaccgctgcatcctactccatcttctatattgattctccagttcagagagttatctccat |
9303021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 2732 - 2873
Alignment:
| Q |
68 |
ttcttctcccagccaaagcaaaaccaccgaaca--acatccaccaccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgc |
165 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| ||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2732 |
ttcttctcccaaccaaagcaag-cgaccgaacattacatccaccaccacaccaccgctggtgagccgcgaccactctcctccttctccatccatcaccgc |
2830 |
T |
|
| Q |
166 |
cgca-ccccctcaatcttctgtattgattctttagtttagaga |
207 |
Q |
| |
|
||| | |||| ||||||||| | ||||||| |||||||||| |
|
|
| T |
2831 |
tgcatactcctccatcttctgtttcgattcttcagtttagaga |
2873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1160 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1160
Description:
Target: scaffold1160; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 2374 - 2439
Alignment:
| Q |
103 |
atccaccaccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2374 |
atccaccaccacaccaccgccggtgagccgcgaccactctcctccttctccatccatcaccgccgc |
2439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 8589 - 8482
Alignment:
| Q |
101 |
acatccaccaccacaccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgca-ccccctcaatcttctgtattgattctttag |
199 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||| || ||| | |||| ||||||||| | ||||||| || |
|
|
| T |
8589 |
acatccaccaccacaccaccgctggtgagccgcgaccactctcctccttctccatccatcactgctgcatactcctccatcttctgtttcgattcttcag |
8490 |
T |
|
| Q |
200 |
tttagaga |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
8489 |
tttagaga |
8482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 11367 - 11313
Alignment:
| Q |
114 |
caccactgccggcgagccgcgaccactcttctccttctccatccatcaccgccgc |
168 |
Q |
| |
|
|||||| | ||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11367 |
caccaccgacggtgagccgcgaccactttcctccttctccatccatcaccgccgc |
11313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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