View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_low_15 (Length: 232)
Name: NF6202_low_15
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 25910796 - 25910595
Alignment:
| Q |
15 |
atgaagcacaaaacagatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatcta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910796 |
atgaagcacaaaacagatgagaggtaggtagtggcaagggagcagagcactgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatcta |
25910697 |
T |
|
| Q |
115 |
aatattcatcatttcacattaaaccatattgtttcaaatggatgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910696 |
aatattcatcatttcacattaaaccatattgtttcaaatggacgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaac |
25910597 |
T |
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| Q |
215 |
ac |
216 |
Q |
| |
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|| |
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| T |
25910596 |
ac |
25910595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 38879380 - 38879586
Alignment:
| Q |
15 |
atgaagcacaaaacagatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatcta |
114 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
38879380 |
atgaagcacaaaatagatgagaggtaggtagtggtaagggagcagagcactgtagcttaaaaagaaaagaagtagatagatatcatcacaaaacaatcta |
38879479 |
T |
|
| Q |
115 |
aatattcatcatttcacattaaaccatattgtttcaaatggatgaggatt-----gtgcattacgagcaaaataaaaatggagaaggggatgtgaagatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38879480 |
aatattcatcatttcacattaaaccatattgtttcaaatggacgaggattgtgcagtgcattacgagcaaaataaaaatggagaaggggatatgaagatg |
38879579 |
T |
|
| Q |
210 |
aaaacac |
216 |
Q |
| |
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||||||| |
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| T |
38879580 |
aaaacac |
38879586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 26864171 - 26864100
Alignment:
| Q |
20 |
gcacaaaacagatgagaggtaggtagtggcaaggg-agtagagccctgtagcttaaaaagaaaagaagcagg |
90 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
26864171 |
gcacaaaacagatgagaggtaggtcgtggcaaggggagcagagcactgtagcttaaaaagaaaagaagcagg |
26864100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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