View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6202_low_2 (Length: 437)
Name: NF6202_low_2
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 185 - 426
Target Start/End: Original strand, 40121984 - 40122223
Alignment:
| Q |
185 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttgtatccagtagctatgatacttggtt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
40121984 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttatatccagcagctatgatacttggtt |
40122083 |
T |
|
| Q |
285 |
cattttgacattgaataatatgtcttatatatccaattgtactgaagagatggtagataggaaatttggttgtttgtgaaaatgtgtttagttgt--ttg |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
40122084 |
cattttgacattgaataatatgtct----tatccaattgtactgaagagatggtagataggaaatttggttgtttatgaaaatgtgtttagttgttgttg |
40122179 |
T |
|
| Q |
383 |
atccacatcgataagttgtggtgtcccgttaaataagttgatga |
426 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40122180 |
atacacatcgataagttgtggtgtcccgttaaataagttgatga |
40122223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40121916 - 40121973
Alignment:
| Q |
39 |
gaattgtacgcgacgttgattagaattttcagctgctgcgcgtaaactgttcttctat |
96 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40121916 |
gaattgtacgggacgtcgattagaattttcagctgctgcgcgtaaactgttcttctat |
40121973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 40093333 - 40093386
Alignment:
| Q |
163 |
ttcaaatttaatttaacatttcttttgagttcaccaaatgccaaaaagactata |
216 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||| ||||||||| |||||||||| |
|
|
| T |
40093333 |
ttcaaatttaatttaacttttattttgatttcatcaaatgccataaagactata |
40093386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University