View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_low_3 (Length: 436)
Name: NF6202_low_3
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 11712208 - 11712624
Alignment:
| Q |
15 |
agaaactataggttgcatatgtgtttctgtgtacctactacactgaaaagtagatgattgctgcaaacatcacatttgaaaacaaagaaaagttttgcaa |
114 |
Q |
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| T |
11712208 |
agaaactataggttgcatatgtgtttctgtgtacctactacactgaaaagtagatgattgctgcaaacatcacatttgaaaacaaagaaaagttttgcaa |
11712307 |
T |
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| Q |
115 |
aaagcactttgcttcattatgaaagtaaatattagataacctttcaatctgtccaactagatcaattttcagctttttcactcaaggtttgttaacatat |
214 |
Q |
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| T |
11712308 |
aaagcactttgcttcattattaaagtaaatattagataacctttcaatctgtccaacaagatcaattttcagctttttcactcaaggtttgttaacatat |
11712407 |
T |
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| Q |
215 |
ccttaatatatatggaaagatgaaactagagtgtgattgaagggtgaataaggagaagaacaaagaataaatcatagtgatgtttacctcaaaacagttg |
314 |
Q |
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| T |
11712408 |
ccttaatatatatggaaagatgaaactagagtgtgattgaaggatgaataaggagaagaacaaagaataaatcatagtgatgtttacctcaaaacagttg |
11712507 |
T |
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| Q |
315 |
aaaaaactagaacagtataataataaaataaacaaaacaagtttcacaaatcatagatatggaacgtgaaatga--atatgaataatattaggtaggatg |
412 |
Q |
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| T |
11712508 |
aaaaaactagaacagtataataataaaataaacaaaacaagtttcacaaatcatggatatggaacgtgaaatgaatatatgaatgataataggtaggatg |
11712607 |
T |
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| Q |
413 |
tttgtatttttcttctc |
429 |
Q |
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| T |
11712608 |
tttgtatttttcttctc |
11712624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 420
Target Start/End: Original strand, 12063787 - 12063995
Alignment:
| Q |
225 |
tatggaaagatgaaactagagtgtgattgaagggtgaataaggagaagaacaaagaataaatcatagtgatgtttacctcaaaacagttgaaaaaac--- |
321 |
Q |
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| T |
12063787 |
tatggaaacgtgaaagtagagtgtgattgaaggatgaataaggataagaacaaa-------tcatagtgatgtttacctcaaaacagttgacaaatcata |
12063879 |
T |
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| Q |
322 |
tagaa-----------cagtataataataaaataaacaaaacaagttt--cacaaatcatagatatggaacgtgaaatgaatatgaataatat----tag |
404 |
Q |
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| T |
12063880 |
ttgaatgaatatgtgacagtataataataaaacaaacaatacaagtttttcacaaatcatagatatggaacgtgaaatgaatatcaatgatatataatag |
12063979 |
T |
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| Q |
405 |
gtaggatgtttgtatt |
420 |
Q |
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| T |
12063980 |
gtaggatgtttgtatt |
12063995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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