View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_low_5 (Length: 357)
Name: NF6202_low_5
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 3469847 - 3469517
Alignment:
| Q |
17 |
ataaatacataatccaaagccatgctaaactacgaacatcaaataatccgaaaagcacacaataaattttcaagtatacatttcctgattcagagaaata |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3469847 |
ataaatacataatccaaagccatgctaaactaggaacatcaaataatccgaaaagcacacaataaattttcaagtatacatttcctgattcagagaaata |
3469748 |
T |
|
| Q |
117 |
ttttgacaaacatttgagatcaagagnnnnnnnnnnnnnnnnnnnnnnnncaagatggacatctaagccactactgagatacaaaatggaatatgcaatt |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3469747 |
ttttgacaaacatttgagatcaagagaaataaaaagaaaaaataaataaacaagatggacatctaagccactactgagatacaaaatggaatatgcaatt |
3469648 |
T |
|
| Q |
217 |
tgtccttggttttacattggtaataaaatagttggtggctcaaaaacactaagaggattgtttggcatcaaacaaacaggtaaacctggtccatagaact |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3469647 |
tgtccttgattttacattggtaataaaatagttggtggctcaaaaacactaagaggattgtttggcatcaaacaaacaggtaaacctggtccatagaact |
3469548 |
T |
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| Q |
317 |
ctactcaacattcacagcctgtggatctctg |
347 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3469547 |
ctactcaacattcacagcctgtggatctctg |
3469517 |
T |
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