View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6202_low_7 (Length: 307)
Name: NF6202_low_7
Description: NF6202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6202_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 44155420 - 44155708
Alignment:
| Q |
1 |
aaacgagcccaggggagaaagaaaaggaaatgcaactcacccaaaagttccagcaacatcagtacaaataatttgggaagaagaagaaccccaactagcc |
100 |
Q |
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| T |
44155420 |
aaacgagcccaggggagaaagaaaaggaaatgctactcacccaaaagttccagcaacatcagtacaaataatttgggaagaagaagaaccccaactagcc |
44155519 |
T |
|
| Q |
101 |
agtccaaaatctgagagctgaagaaataaacattttgcttagagtatttgtataactgaaatcaagttggaaaaaatacaaaagagtgacaacacccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155520 |
agtccaaaatctgagagctgaagaaataaacattttgcttagagtatttgtataactgaaatcaagttggaaaaaatacaaaagagtgacaacacccaac |
44155619 |
T |
|
| Q |
201 |
agaacaagtagagtatatatattaaagtacctgagcctcaaaatcatctgaaagaaggatattagacgatttgacatccctatggatta |
289 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155620 |
agaacaagtagagtatatatattgaagtacctgagcctcaaaatcatctgaaagaaggatattagacgatttgacatccctatggatta |
44155708 |
T |
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