View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_10 (Length: 470)
Name: NF6203_high_10
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 32876591 - 32876141
Alignment:
| Q |
1 |
gtggtggaatctgaaagcgtgttggaataagtcattggtctggtatttaattgggcttagttgtggtgatgcgaagttaagcttctgttttcaagggttt |
100 |
Q |
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| T |
32876591 |
gtggtggaatctgaaagcgtgttggaataagtcattggtctagtgtttaattgggcttagttgtggtgatgcgaagttaagcttctgttttcaagggttt |
32876492 |
T |
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| Q |
101 |
tattttattggaggggttatggtagcattcgataggtgattgaattttgtttctatagccactcatgaggaagtgtgggagtttgggtttgtttttaggt |
200 |
Q |
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| T |
32876491 |
tattttattggaggggttatggtagcattcgataggtgattgaattttgtttctatagccactcatgaggaagtgtgggagtttgggtttgtttttaggt |
32876392 |
T |
|
| Q |
201 |
attgcctttgattttggtagttaggtttcttattggtattggtggtaattctcaatttaagtgatgtttgtattagtgttgttatgatttcattttggat |
300 |
Q |
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| T |
32876391 |
attgcctttgattttggtagttaggtttcttattggtattggtggtaattctcaatttaagtgatgtttgtattagtgttgttatgatttcattttggat |
32876292 |
T |
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| Q |
301 |
gttccacgtgtataatacgattcctttgatttgtggtttttgattgtcggtccatgttcgtcttgtacatggacttgattgttaatatctttttctttat |
400 |
Q |
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| T |
32876291 |
gttccacctatataatacgattcctttaacttgtggtttttgtttgtcggtccatgttcgtcttgtacatggacttgattgttaatatctttttctttat |
32876192 |
T |
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| Q |
401 |
nnnnnnnggctctataaaacctagctcaactgaaatagttaggttggatgt |
451 |
Q |
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| T |
32876191 |
aagaaaaggctctataaaacctagctcaactgaaatagttaggttggatgt |
32876141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 27044025 - 27044096
Alignment:
| Q |
214 |
ttggtagttaggtttcttattggtattggtggtaattctcaatttaagtgatgtttgtattagtgttgttat |
285 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||| |||| |||| |||| |
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| T |
27044025 |
ttggtagttaggtttcttattggggttggtggtagctctcaatttaggtggtgtttgaattactgttattat |
27044096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15676814 - 15676745
Alignment:
| Q |
1 |
gtggtggaatctgaaagcgtgttggaataagtcattggtctggtatttaattgggcttagttgtggtgat |
70 |
Q |
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| T |
15676814 |
gtggtggaatatgaaagaatgttggaataagtcattgttcagatatttaattgggctcatttatggtgat |
15676745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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