View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_12 (Length: 460)
Name: NF6203_high_12
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 27219307 - 27219523
Alignment:
| Q |
6 |
agacatattggctagacgagtgagagtggtgatggacatgtttggcccatgctagtacaacatcattcatcattggaagagtatcgacaacattgtcata |
105 |
Q |
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| T |
27219307 |
agacatattggctagacgagtgagagtggtgatggacatgtttggcccatgctagtgcaacatcattcatcattggaagagtatcgacaacattgtcata |
27219406 |
T |
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| Q |
106 |
ttacaagaggttatacattctatgaaattcaagaaaagaaaggttgggtagatgagtataaaaattgacttggctgctagttaacattacaaatctatgt |
205 |
Q |
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| T |
27219407 |
gtacaagagtttatgcattctatgaaattcaagaaaagaaaggttgggtagatgagtataaaaattgacttggctgctagttaacattacaaatctatgt |
27219506 |
T |
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| Q |
206 |
tcgtatctcctcgtcta |
222 |
Q |
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| T |
27219507 |
tcgtatctcctcgtcta |
27219523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 27219519 - 27219662
Alignment:
| Q |
303 |
gtctaaatataggtttggtttgaagggtaataatatggagaatgagaaatgagattatac--taattaagctaagtatcaaataatatgaattaagttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27219519 |
gtctaaatataggtttggtttgaagggtaataatatggagaatgggaaatgagattatacactaattaagctaagtatcaaataatatgaattaagttat |
27219618 |
T |
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| Q |
401 |
atctatagccattttgttttgtgctatttatagtagcttaaaaa |
444 |
Q |
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| T |
27219619 |
atctatagccaatttgttttgtgctatttatagtagcttaaaaa |
27219662 |
T |
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