View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6203_high_2 (Length: 851)

Name: NF6203_high_2
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6203_high_2
NF6203_high_2
[»] chr5 (3 HSPs)
chr5 (19-614)||(39674590-39675185)
chr5 (692-782)||(39675263-39675353)
chr5 (23-113)||(19968417-19968507)
[»] chr3 (1 HSPs)
chr3 (24-274)||(34626172-34626433)
[»] chr1 (6 HSPs)
chr1 (161-274)||(51044747-51044865)
chr1 (437-490)||(4865830-4865883)
chr1 (52-115)||(40037525-40037588)
chr1 (97-140)||(51044880-51044923)
chr1 (451-485)||(40800284-40800318)
chr1 (451-496)||(48607771-48607816)
[»] chr2 (1 HSPs)
chr2 (416-495)||(5164813-5164892)
[»] chr8 (2 HSPs)
chr8 (438-497)||(32648313-32648372)
chr8 (456-497)||(4230554-4230595)
[»] chr6 (2 HSPs)
chr6 (407-469)||(3037595-3037658)
chr6 (438-496)||(33697122-33697180)
[»] chr4 (3 HSPs)
chr4 (453-491)||(32866976-32867014)
chr4 (454-499)||(49233814-49233859)
chr4 (451-496)||(50376671-50376716)


Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 39674590 - 39675185
Alignment:
Q  19 ctggcttattcacgagaaattttcttggggcttctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctgaata 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39674590 ctggcttattcacgagaaattttcttggggcttctgttcaagctaatccaccgatattatagtgattgatcaaatcacccattaaaagtgcttctgaata 39674689  T
Q  119 ttcctgtgaggattctaacattgtgtgtgtagctaaatccctttgagattgagacaatggcattatcattggtgatctttcctttcttctttagaagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39674690 ttcctgtgaggattctaacattgtgtgtgtagctaaatccctttgagattgagacaatggcattatcgttggtgatctttcctttcttctttagaagaga 39674789  T
Q  219 ttcatcattgaggaagggtttatgtgtagctggatcaatcccttgtttcattagttacttggttgcagccgatccctccaactcagtaattgtatcatcc 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39674790 ttcattattgaggaagggtttatgtgtagctggatcaatcccttgtttcattacttacttggttgcagccgatccctccaactaagtaattgtatcatcc 39674889  T
Q  319 gaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttacccnnnnnnncctttcaaataacttaacctttttaagatga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||    
T  39674890 gaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttaccctttttttcctttcaaataacttaacatttttaagatga 39674989  T
Q  419 ataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcacaattttagtgtgtgagcttatt 518  Q
    ||||||||||||||| ||||||||||  |  | | |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||    
T  39674990 ataagtgagttatctggagttcgaacctcagttcttacatatataatgcaacgtctcaaccaattgagttaaactcacaattttagtgtgtgaacttatt 39675089  T
Q  519 taaaaatggatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagactgtgtagttaaatatttcaataaatcaatggacgtcagct 614  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39675090 taaaaatagatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagaccgtgtagttaaatattttaataaatcaatggacgtcagct 39675185  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 692 - 782
Target Start/End: Original strand, 39675263 - 39675353
Alignment:
Q  692 ttacgttcaacgaattatttaaaactttgtttctttcaaatttgnnnnnnnaataacactagttttttaaaacttaattagtctgtgcaca 782  Q
    |||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  39675263 ttacgttcaatgaattatttaaaactttgtttctttcaaatttgttttttttataacactagttttttaaaacttaattagtctgtgcaca 39675353  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 19968507 - 19968417
Alignment:
Q  23 cttattcacgagaaattttcttggggcttctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttct 113  Q
    ||||||| |||||||||||||||  |||| ||||||| |||  | ||| |||||||||||||   ||||||||||||||| ||||||||||    
T  19968507 cttattcgcgagaaattttcttgaagcttttgttaaaactatacaaccaatattatagtgataattcaaatcactcattagaagtgcttct 19968417  T

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Target: chr3 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 34626172 - 34626433
Alignment:
Q  24 ttattcacgagaaattttcttggggcttctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctgaatattcct 123  Q
    |||||||  |||||| ||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||| || || |    
T  34626172 ttattcataagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaagggattctgagtagtcat 34626271  T
Q  124 gtgaggattctaacattgtgtgtgtagcta-aatccct-----ttgagattgagacaatggcattatcattggtgatctttcctt-tctt-ctttagaag 215  Q
    |||||||||||| ||||||||||||||||| ||| | |     |||||| ||||||| |||||||||||||| || | ||||||| |||| ||||| |||    
T  34626272 gtgaggattctagcattgtgtgtgtagctagaattctttgaggttgagagtgagacagtggcattatcattgatggtttttccttctcttcctttataag 34626371  T
Q  216 agattc---atcattgaggaagggtttatgtgtagctggatcaatcccttgtttcattagtt 274  Q
    ||||||   || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34626372 agattcaatattattgatgaagggtttatgtgtagctggatcaatcccttgtttcattagtt 34626433  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 51044865 - 51044747
Alignment:
Q  161 ttgagattgagacaatggcattatcattggtgatctttcctt-tcttcttt----agaagagattcatcattgaggaagggtttatgtgtagctggatca 255  Q
    ||||| |||||||| |||||||||||||| || | ||||||| ||||| ||    ||||||||||||| |||||  ||||||||||||||||||||||||    
T  51044865 ttgaggttgagacagtggcattatcattgatggtttttccttctcttcctttacaagaagagattcattattgatcaagggtttatgtgtagctggatca 51044766  T
Q  256 atcccttgtttcattagtt 274  Q
    |||||||||||||||||||    
T  51044765 atcccttgtttcattagtt 51044747  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 4865830 - 4865883
Alignment:
Q  437 gttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaa 490  Q
    ||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||    
T  4865830 gttcgaactccgacccctacatatattatgcaatgtccctaccaactgagttaa 4865883  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 40037525 - 40037588
Alignment:
Q  52 ctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctga 115  Q
    ||||||||||||| ||||| |||||||||||||   ||||||| ||||||| || |||||||||    
T  40037525 ctgttaaagctaaaccaccaatattatagtgataattcaaatcgctcattagaaatgcttctga 40037588  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 51044923 - 51044880
Alignment:
Q  97 tcattaaaagtgcttctgaatattcctgtgaggattctaacatt 140  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||    
T  51044923 tcattagaagtgcttctgaatattcatgtgaggattctagcatt 51044880  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 485
Target Start/End: Original strand, 40800284 - 40800318
Alignment:
Q  451 ccctacatatataatgcaacgtctctatcaactga 485  Q
    ||||||||||||||||||| |||||||||||||||    
T  40800284 ccctacatatataatgcaatgtctctatcaactga 40800318  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 48607771 - 48607816
Alignment:
Q  451 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 496  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||    
T  48607771 ccctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 5164892 - 5164813
Alignment:
Q  416 tgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 495  Q
    |||||||||||| | |||   ||||||| ||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  5164892 tgaataagtgagatgtctaaggttcgaattccgacccctacatatataatgcaatatctctatcaactaagttaaactca 5164813  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 497
Target Start/End: Original strand, 32648313 - 32648372
Alignment:
Q  438 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 497  Q
    ||||||| |||||| |||||||||| || ||||||||| | ||| |||||||||||||||    
T  32648313 ttcgaaccccgatctctacatatattatacaacgtctcaaacaattgagttaaactcaca 32648372  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 497
Target Start/End: Complemental strand, 4230595 - 4230554
Alignment:
Q  456 catatataatgcaacgtctctatcaactgagttaaactcaca 497  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  4230595 catatataatgcaatgtctttatcaacagagttaaactcaca 4230554  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 3037595 - 3037658
Alignment:
Q  407 tttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatat-ataatgcaa 469  Q
    ||||||||||||||||||| ||| |||  ||||||||| ||| ||||||||||| |||||||||    
T  3037595 tttttaagatgaataagtgggttgtctgaagttcgaacaccgctccctacatatcataatgcaa 3037658  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 33697122 - 33697180
Alignment:
Q  438 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 496  Q
    |||||||||||| |||| |||||| |||||||  || |||||||||||||||| |||||    
T  33697122 ttcgaactccgacccctgcatataaaatgcaatatccctatcaactgagttaagctcac 33697180  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 32867014 - 32866976
Alignment:
Q  453 ctacatatataatgcaacgtctctatcaactgagttaaa 491  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  32867014 ctacatatattatgcaacgtctctatcaattgagttaaa 32866976  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 49233814 - 49233859
Alignment:
Q  454 tacatatataatgcaacgtctctatcaactgagttaaactcacaat 499  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||    
T  49233814 tacatatattatgcattgtctctatcaactgagttaaacttacaat 49233859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 50376671 - 50376716
Alignment:
Q  451 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 496  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||    
T  50376671 ccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

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