View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_20 (Length: 365)
Name: NF6203_high_20
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 5148391 - 5148052
Alignment:
| Q |
17 |
gatgtatgagatctatctagtctagtatagataaagatcaagttgaatgtgggcctaggaagtacatgctttcgctttcatattaggctgtaagagtctt |
116 |
Q |
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| T |
5148391 |
gatgcatgagatctatctagtctagtatagataaagatcaagttgaatgtgggcctaggaagtacatgcgttcgctttcatattaggctgtaagagtctt |
5148292 |
T |
|
| Q |
117 |
cttttgttgatttagacatgcaagatataattttccagaagaaggtgaattttcaaatgagaccctttgatgtgtatatataggccacactgacttcgta |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148291 |
cttttgttgatttggacatgcaagatataattttccagaagaaggtgaattttcaaatgagaccctttgatgtgtatatataggccacactgacttcgta |
5148192 |
T |
|
| Q |
217 |
tttttgtctagatgtatttatcattgcccatgtgacaaataagacaatataacaattgaaattgaattgaattggagctatatatgtcaccctaggtccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148191 |
tttttgtctagatgtatttatcattgcccatgtgacaaataagacaatataacaattgaaattgaattgaattggagctatatatgtcaccctaggtccc |
5148092 |
T |
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| Q |
317 |
cgctacatggccctcacaaatcaattcataatagtattat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5148091 |
cgctacatggccctcacaaatcaattcataatagtattat |
5148052 |
T |
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