View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_high_25 (Length: 320)
Name: NF6203_high_25
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 36349506 - 36349814
Alignment:
| Q |
1 |
tctgaaatagaaagatggtagtaattaaattttcattagtaaattaaaattctatgttactcaagatttgatgatccaaaccaaaagagagtgagtatat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36349506 |
tctgaaatagaaagatggta---attaaattttctttagtaaattaaaattctatgttactcaagatttgatgatccaaaccaaaagagagtgagtatat |
36349602 |
T |
|
| Q |
101 |
gtatacttactgtccgctccgcctaactgattaactgcttcaataaaccttgcatgaagatcaggtgtccattttaatctaggttttgcatctgttgaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36349603 |
gtatacttactgtccgctccgcctaactgattaactgcttcgataaaccttgcatgaagatcaggtgtccattttaatctaggttttgcatctgttgaga |
36349702 |
T |
|
| Q |
201 |
gcacaagtcctgaatcactagaaccatttcctgtttgaaggaacatgtgcctctcagatggtattgacattcttgaagaagagtgaatattttttccttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36349703 |
gcacaagtcctgaatcactagaaccatttcctgtttgaaggaacatgtgcctctcagatggtattgacattcttgaagaagagtgaatattttttccttg |
36349802 |
T |
|
| Q |
301 |
atgatgatgatg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36349803 |
atgatgatgatg |
36349814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 10294298 - 10294386
Alignment:
| Q |
128 |
tgattaactgcttcaataaaccttgcatgaagatcaggtgtccattttaatctaggttttgcatctgttgagagcacaagtcctgaatc |
216 |
Q |
| |
|
||||| ||||||||||| || | | |||||||||| ||||||||||||| ||| || || ||||| ||||| || |||||||||||||| |
|
|
| T |
10294298 |
tgattgactgcttcaatgaaacgttcatgaagatctggtgtccattttagtcttggcttagcatcagttgaaagaacaagtcctgaatc |
10294386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University