View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_high_28 (Length: 299)
Name: NF6203_high_28
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 52564872 - 52564970
Alignment:
| Q |
66 |
atcaccatcatatcctactctctttgacccacaagatcaagttcaacaaccatcttattactgccaaacaaaccacttaccacatgatcaagaggtaaa |
164 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52564872 |
atcaccatcatatcctactctctttaactcacaagatcaagttcaaaaaccatcttattactgccaaacaaaccacttaccacatgatcaagaggtaaa |
52564970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 52565033 - 52565095
Alignment:
| Q |
227 |
gtagcataattaatcccttccaatattttgtgatttgatcctctttaattaatttgatgatgt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52565033 |
gtagcataattaatcccttccaatattttgtgatttgatcctctttaattaatttgatgatgt |
52565095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University