View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_31 (Length: 264)
Name: NF6203_high_31
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 43013774 - 43013944
Alignment:
| Q |
84 |
atcactttccttgtaagtaactgcatactagttatcatccttatcctacacagttaattgtatggatccatttcttttatattctcagtcacatca--nn |
181 |
Q |
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| T |
43013774 |
atcactttccttgtaagtaactgcatactagttatcatccttatcctacacagttaattgtatggatccatttcttttatattctcagtcacatcaatat |
43013873 |
T |
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| Q |
182 |
nnnnnnnnnnnngtatgcttgagaattattttttccaaattttaatttctacatgatcatagtctgtgctc |
252 |
Q |
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| T |
43013874 |
atatatatgtatgtatgcttgagaattattttttccaaattttaatttctacatgatcatagtctgtgctc |
43013944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43013703 - 43013754
Alignment:
| Q |
1 |
ttatatctatctatctatctaccacctcaaccttattctaacagtttcttcc |
52 |
Q |
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| T |
43013703 |
ttatatctatctatctatctaccacctcaaccttattctaacagtttcttcc |
43013754 |
T |
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