View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_50 (Length: 203)
Name: NF6203_high_50
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 21123424 - 21123592
Alignment:
| Q |
18 |
aaaagcttataagaagcttcaacttattcccaaagcaatcagttaatgtaattcacggtgatcattctcttgatcattttctacccggaaagatcgtcga |
117 |
Q |
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| T |
21123424 |
aaaagcttataagaagcttcaacttattcccaaagcaatcagttaatgtaattcatggtgatcattctcttgatcattttctacccggaaagatcgtcga |
21123523 |
T |
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| Q |
118 |
gaagaagttctcgttttttggtgattctggtggtccgtctattgaggatcttggtcaccatgctggata |
186 |
Q |
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| T |
21123524 |
gaagaagttctcgtttttcggtgattctggtggtccttctattgaggatcttggtcaccatgctggata |
21123592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 21143347 - 21143515
Alignment:
| Q |
18 |
aaaagcttataagaagcttcaacttattcccaaagcaatcagttaatgtaattcacggtgatcattctcttgatcattttctacccggaaagatcgtcga |
117 |
Q |
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|||||||||||| |||||| |||||||| |||||| | |||||||| ||||||| |||||||| ||| ||||||||||| | || ||||| ||||||| |
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| T |
21143347 |
aaaagcttataaaaagctttaacttattgccaaaggatccagttaatataattcatggtgatcactctattgatcattttgtccctggaaaactcgtcga |
21143446 |
T |
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| Q |
118 |
gaagaagttctcgttttttggtgattctggtggtccgtctattgaggatcttggtcaccatgctggata |
186 |
Q |
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| T |
21143447 |
gaagaagttctcgttttttagtgattctaatggtccttctattgaagatcttggtcatcatgccggata |
21143515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 21149226 - 21149326
Alignment:
| Q |
86 |
cttgatcattttctacccggaaagatcgtcgagaagaagttctcgttttttggtgattctggtggtccgtctattgaggatcttggtcaccatgctggat |
185 |
Q |
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|||||| ||||| | || ||||||||||| ||||| |||||||||||||||||| |||||| ||| | |||||||| |||||||||||||||| |||| |
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| T |
21149226 |
cttgatgattttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattgataatcttggtcaccatgccggat |
21149325 |
T |
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| Q |
186 |
a |
186 |
Q |
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| T |
21149326 |
a |
21149326 |
T |
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