View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_high_7 (Length: 550)
Name: NF6203_high_7
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_high_7 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 25802468 - 25801936
Alignment:
| Q |
1 |
tctataactccaactacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802468 |
tctataactccagctacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatc |
25802369 |
T |
|
| Q |
101 |
ggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25802368 |
ggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcagcg |
25802269 |
T |
|
| Q |
201 |
tgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802268 |
tgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgta |
25802169 |
T |
|
| Q |
301 |
gtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgtttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802168 |
gtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgtttt |
25802069 |
T |
|
| Q |
401 |
gggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgtttgtgtgatattgcatatgtaatggtaactgttgttatgtat |
500 |
Q |
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| T |
25802068 |
gggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctttttgtttgtgtgatattgcatatgtaatggtaactgttgttatgtat |
25801969 |
T |
|
| Q |
501 |
ttataattggaaggggcgtgatttggacttgtg |
533 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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| T |
25801968 |
ttataattggaaggggcatgatttggacttgtg |
25801936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 460
Target Start/End: Complemental strand, 25816517 - 25816102
Alignment:
| Q |
2 |
ctataactccaactacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcg |
101 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||| |||| |
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| T |
25816517 |
ctataactccagctacgtccttttcttccacaacggtgacatggtgaactcacttttctataaaggtaaagtttcatttccccgacgtt----------- |
25816429 |
T |
|
| Q |
102 |
gcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgt |
201 |
Q |
| |
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||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| |
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| T |
25816428 |
-------cgcgcaacatgggtggaggtcaaatccacatgatttgcagtggtatacaaacccgttcacgtc---------------gcagtaacgcggcgt |
25816351 |
T |
|
| Q |
202 |
gtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtag |
301 |
Q |
| |
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|||||||||||| || | ||||||||||||||||| || | ||||||||||||||| |||||||||| |||||||||||||||||| | | |
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| T |
25816350 |
gtttcctggtgggtttgg----------aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattg |
25816261 |
T |
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| Q |
302 |
tcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttg |
401 |
Q |
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|| || ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25816260 |
tcacaaatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttg |
25816161 |
T |
|
| Q |
402 |
ggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgttt |
460 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
25816160 |
ggtggctgaaatgtgatatctcgttgtatttcattgttctgtttcttctctatttgttt |
25816102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 42 - 534
Target Start/End: Original strand, 112104 - 112585
Alignment:
| Q |
42 |
atggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacagga |
141 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
112104 |
atggtgaactcactttcctgtaaaggtaaagtttcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtggaggtcgaacccacagga |
112203 |
T |
|
| Q |
142 |
tttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcatttt |
241 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
112204 |
tttgcagtggtaaacaaacccgttcacatccttttcgcatgcgttgcagtaatgcggcgtgtttcctggtgggatttgcatgaattggaaggtgcatttt |
112303 |
T |
|
| Q |
242 |
gtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctattt |
341 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
112304 |
gtgtaaaatggatcgaagagtgtggtggaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctattt |
112403 |
T |
|
| Q |
342 |
ctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttct |
441 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
112404 |
ctttgcagccatcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgt--- |
112500 |
T |
|
| Q |
442 |
gtttcttctctgtttgtttgtgtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgt |
534 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112501 |
--------tctgtttgtttgtgtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgt |
112585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 108768 - 108813
Alignment:
| Q |
1 |
tctataactccaactacgtccttttcttccgcaacggtgacatggt |
46 |
Q |
| |
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|||||||||||| |||||| ||||||| || ||||||||||||||| |
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| T |
108768 |
tctataactccagctacgtgcttttctcccacaacggtgacatggt |
108813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 12530663 - 12530521
Alignment:
| Q |
288 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
387 |
Q |
| |
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||||||| || ||||| || ||| |||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| ||| | ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
388 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
430 |
Q |
| |
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|||||| |||||| | ||||| ||||| ||||||||| ||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctcattgtat |
12530521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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