View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_low_11 (Length: 460)
Name: NF6203_low_11
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_11 |
 | |
|
| [»] scaffold0557 (4 HSPs) |
| | |
|
| [»] scaffold0115 (3 HSPs) |
| | |
|
| [»] scaffold0442 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 21006383 - 21005948
Alignment:
| Q |
17 |
aatatattggtgcttattcccaaggtgtcgggtgctcagaccatggaagacgtccgaccatttgcattggaacattagctacttcagcattagacacttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21006383 |
aatatattggtgcttattcccaaggtgtcaggtgcttagaccatggaagacgtccgacctattgcattggaacattagctacttcagcattatgcacttt |
21006284 |
T |
|
| Q |
117 |
gtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttc |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006283 |
gtagtgatagtagctatttgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttc |
21006184 |
T |
|
| Q |
217 |
ataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006183 |
ataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttag |
21006084 |
T |
|
| Q |
317 |
aattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
21006083 |
aattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttttgattgacatt |
21005984 |
T |
|
| Q |
417 |
gtgatttggaatcatagtactcgtgttgttcatctc |
452 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |
|
|
| T |
21005983 |
gtgatttggaatcatagtactcatgttgttcttctc |
21005948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 78 - 447
Target Start/End: Complemental strand, 20903606 - 20903237
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
177 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| || | |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
20903606 |
ttgcattggaacattagctacttcagtattaggcactttgcagtgatagtagctatttggacccccttgttgcgcatagaaattttgatccatttgatgc |
20903507 |
T |
|
| Q |
178 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
277 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |||||| || |
|
|
| T |
20903506 |
tgcatgttttggttaaatcctggagttgcaaccatgttcataactggcattggagtactcatcattgtagtattcatcatggtgttgctcttctgttgtt |
20903407 |
T |
|
| Q |
278 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact |
377 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20903406 |
gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact |
20903307 |
T |
|
| Q |
378 |
ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttc |
447 |
Q |
| |
|
| | | ||||||||| | |||||| ||| ||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
20903306 |
tccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttc |
20903237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 78 - 452
Target Start/End: Complemental strand, 20922206 - 20921838
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| | ||||| |||||| |||| |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
20922206 |
ttgcattggaacattagctacttcagcatcacgcactttgcaatgataatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgc |
20922107 |
T |
|
| Q |
178 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
277 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||| ||| |||||| || |
|
|
| T |
20922106 |
tgcatgttttggttaaatccgggagtggcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgtttctcttctgttgtt |
20922007 |
T |
|
| Q |
278 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact |
377 |
Q |
| |
|
||||||||||||||||||| || ||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20922006 |
gatgaacacttgaagtgtagacctgaggatgca------agtttacactaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact |
20921913 |
T |
|
| Q |
378 |
ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
452 |
Q |
| |
|
| ||| ||||||||||| |||||| ||| ||||| | |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20921912 |
tccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttcttctc |
20921838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 21005900 - 21005850
Alignment:
| Q |
356 |
tgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttt |
406 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21005900 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgtttt |
21005850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 78 - 452
Target Start/End: Complemental strand, 41336764 - 41336390
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||| |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
41336764 |
ttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatctgcacccccttgttgcgcatagaaattttgatccatttgatgc |
41336665 |
T |
|
| Q |
178 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
277 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||||| || |
|
|
| T |
41336664 |
tgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgtt |
41336565 |
T |
|
| Q |
278 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact |
377 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41336564 |
gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact |
41336465 |
T |
|
| Q |
378 |
ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
452 |
Q |
| |
|
| ||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
41336464 |
tccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctc |
41336390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 205 - 452
Target Start/End: Original strand, 5728 - 5981
Alignment:
| Q |
205 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
304 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
5728 |
gcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaa |
5827 |
T |
|
| Q |
305 |
gttg------catgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
398 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
5828 |
actgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttg |
5927 |
T |
|
| Q |
399 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
452 |
Q |
| |
|
|||| ||| ||| ||| || ||||||||||||||||||| |||||||| |||| |
|
|
| T |
5928 |
catgctttgattaacaccgtaatttggaatcatagtactcatgttgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 205 - 453
Target Start/End: Complemental strand, 5324 - 5070
Alignment:
| Q |
205 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
304 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
5324 |
gcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgag |
5225 |
T |
|
| Q |
305 |
gt------tgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
398 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5224 |
acagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgcta |
5125 |
T |
|
| Q |
399 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
453 |
Q |
| |
|
|||| ||| ||| ||| |||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
5124 |
catgctttaattaacactgtgatttagaatcatagtattcatgttgttcttctca |
5070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 5424 - 5327
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||| | ||| |||| |||||||||| |
|
|
| T |
5424 |
ttgcattggaacattagctacttcagcattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaataaattttgatccatttgag |
5327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 5628 - 5722
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt |
172 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||||||||||||||||||| | || | |||||||||||| | ||| |||||||||||| |
|
|
| T |
5628 |
ttgcattggaaccttagctacttcaccattaggcactttgtagtgatagtagctatttccatcaccttgttggccaaagaaattttggtccattt |
5722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 205 - 452
Target Start/End: Complemental strand, 47177 - 46924
Alignment:
| Q |
205 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
304 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || |||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
47177 |
gcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagacttgag |
47078 |
T |
|
| Q |
305 |
gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
398 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||| || |
|
|
| T |
47077 |
actgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttg |
46978 |
T |
|
| Q |
399 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctc |
452 |
Q |
| |
|
|||| ||| ||| ||| ||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
46977 |
catgctttgattaacaccgtgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 395
Target Start/End: Original strand, 47840 - 48039
Alignment:
| Q |
205 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
304 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| ||||||| |
|
|
| T |
47840 |
gcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgag |
47939 |
T |
|
| Q |
305 |
---------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg |
395 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
47940 |
actgctgcatgtgcatgttttgattaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg |
48039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 47277 - 47180
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| | | | ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
47277 |
ttgcattggaacattagctacttcagcattaggcactttgtagtgattatagctatttttatcaccttgttggccattgaaattttggtccatttgag |
47180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 243 - 447
Target Start/End: Original strand, 9160 - 9370
Alignment:
| Q |
243 |
tgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgt------tagaattaacactaggagttgga |
336 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
9160 |
tgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttgga |
9259 |
T |
|
| Q |
337 |
accatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtac |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||| ||| || ||||||||||||||||| |
|
|
| T |
9260 |
accatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtac |
9359 |
T |
|
| Q |
437 |
tcgtgttgttc |
447 |
Q |
| |
|
|| |||||||| |
|
|
| T |
9360 |
tcatgttgttc |
9370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 205 - 453
Target Start/End: Complemental strand, 8689 - 8435
Alignment:
| Q |
205 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
304 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| |||||||||||||||| | |||||| | |||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
8689 |
gcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagacttgag |
8590 |
T |
|
| Q |
305 |
gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg |
398 |
Q |
| |
|
||||||| | ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| || |
|
|
| T |
8589 |
actgcatgtgcatgttttgatttacactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttg |
8490 |
T |
|
| Q |
399 |
catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcatctca |
453 |
Q |
| |
|
|||| ||| ||| ||| ||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
8489 |
catgctttaattaacaccgtgatttagaatcatagtattcatgttgttcttctca |
8435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 9043 - 9137
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| | |||||||||||| | ||| |||||||||||| |
|
|
| T |
9043 |
ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaagaaattttggtccattt |
9137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 8789 - 8735
Alignment:
| Q |
78 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagcta |
132 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
8789 |
ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagcta |
8735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 2589640 - 2589508
Alignment:
| Q |
135 |
tgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagta |
234 |
Q |
| |
|
|||| |||||||||| |||| ||| | || ||||||||||| ||||||||||||||||||| |||| | || |||||| ||||||| | |||||| |
|
|
| T |
2589640 |
tgcatccccttgttgatcatagaaattctgctccatttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaagaagta |
2589541 |
T |
|
| Q |
235 |
ctcatcaatgaagtattcatcatgttgttgctc |
267 |
Q |
| |
|
|| |||| ||||||||||||||| || ||||| |
|
|
| T |
2589540 |
cttatcatggaagtattcatcatggtgctgctc |
2589508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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