View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_13 (Length: 458)
Name: NF6203_low_13
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 53492120 - 53492557
Alignment:
| Q |
1 |
ctaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcagaattttaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492120 |
ctaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcagaattttaaggc |
53492219 |
T |
|
| Q |
101 |
attatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgttacagcagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492220 |
attatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgttacagcagcca |
53492319 |
T |
|
| Q |
201 |
acacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcacca |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53492320 |
acacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaacaacattgcacca |
53492419 |
T |
|
| Q |
301 |
ttgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagct |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492420 |
ttgattgagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagct |
53492519 |
T |
|
| Q |
401 |
tccaaatcagaatgtccagactttgttacccaagcaac |
438 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
53492520 |
tccaaatcagaatgtccagactttgttacccaagcaac |
53492557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 65 - 438
Target Start/End: Original strand, 53500118 - 53500477
Alignment:
| Q |
65 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
164 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
53500118 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaa---------- |
53500207 |
T |
|
| Q |
165 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgt |
264 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
53500208 |
---agcttgaaagttttg-ttacgttacatcaaccaacacatcattataacatggaaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgt |
53500303 |
T |
|
| Q |
265 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500304 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
53500403 |
T |
|
| Q |
365 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
53500404 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaac |
53500477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 222 - 438
Target Start/End: Original strand, 16071454 - 16071672
Alignment:
| Q |
222 |
aaaggaaaacatggtaaaaaagaaa--gtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
319 |
Q |
| |
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||||||||||||||||||||| ||| || |||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16071454 |
aaaggaaaacatggtaaaaaaaaaaaagtgcctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggc |
16071553 |
T |
|
| Q |
320 |
aagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccag |
419 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||||||| |||||||||||| ||||||| |
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| T |
16071554 |
aagtcgcggtgtccccttatccacttagagtaatagggatatattatagcttcactacttagacgaacagcaagatgagtttccaaatcagactgtccag |
16071653 |
T |
|
| Q |
420 |
actttgttacccaagcaac |
438 |
Q |
| |
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||||||||||||||||||| |
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| T |
16071654 |
actttgttacccaagcaac |
16071672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 250 - 438
Target Start/End: Complemental strand, 45353706 - 45353518
Alignment:
| Q |
250 |
cctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
349 |
Q |
| |
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|||||||||||||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtccccttatccacttagag |
45353607 |
T |
|
| Q |
350 |
taatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
438 |
Q |
| |
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|| || |||||||| | |||||||||| ||||||||| ||||| | || || |||||||| | |||||| || || ||||||||||| |
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| T |
45353606 |
tagtaaggatacataacagtttcactagttggacgaatagcaataggaatctctaaatcagattctccagatttggtcacccaagcaac |
45353518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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