View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_14 (Length: 458)
Name: NF6203_low_14
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 183 - 442
Target Start/End: Original strand, 41459978 - 41460245
Alignment:
| Q |
183 |
tggccggactataaaaagtacaatgcatgatttgcccgtgatcttgtccatgaatacaggcacctctgtagctaatattatttagaaccaagcttctctt |
282 |
Q |
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| T |
41459978 |
tggccggactataaaaagtacaatgcatgatttgcccgtgatcttgtccatgaatacaggcacctctgtagctaatattatttagaaccaagcttctctt |
41460077 |
T |
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| Q |
283 |
aacatttctacctgagattgccgatgtccagcgacaaataataacgaatgtaatacgagttctatcaagtggttgtaactagtaaaagtaactgggaagg |
382 |
Q |
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| T |
41460078 |
aacatttctacctgagattgccgatgtccagcgacaaataatatcgagtgtaatacgagttctgtcaagtggttgtaactagtaaaagtaactgggaagg |
41460177 |
T |
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| Q |
383 |
gaaggtagcgaggcg--------tgtataactgctatgaatgattggctcatttttgtcatagtctgt |
442 |
Q |
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| T |
41460178 |
gaaggtagcgaggcgtgtacttttgtataactgctatgaatgattggctcatttttgtcatagtctgt |
41460245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 41459581 - 41459765
Alignment:
| Q |
1 |
tattctttgcgagccttgaannnnnnncgagattaaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttt |
100 |
Q |
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| T |
41459581 |
tattctttgcgagccttgaatttttttcgagattaaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttt |
41459680 |
T |
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| Q |
101 |
tggagttgtcctgcttgaaatggtatgtggtaggagggtaattgacaataataaaccatatggagaacacaacttggtccaatgg |
185 |
Q |
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| T |
41459681 |
tggagttgtcctgcttgaaatggtatgtggtaggagggtaattgacaataataaaccatatggagaacacaacttggtccaatgg |
41459765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 41449177 - 41449286
Alignment:
| Q |
39 |
ttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
138 |
Q |
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| T |
41449177 |
ttaatagctaaaaacattgttactgtaggtcatcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
41449276 |
T |
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| Q |
139 |
taattgacaa |
148 |
Q |
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| T |
41449277 |
taattgacaa |
41449286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 41442728 - 41442869
Alignment:
| Q |
37 |
ggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggag |
136 |
Q |
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| T |
41442728 |
ggttaatagctgaaaacattgtgactgtaggtcatcttactactaagagcgatgtctatagttttggagttgtcctgcttgaaatgttatccggtaagag |
41442827 |
T |
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| Q |
137 |
ggtaattgacaataataaaccatatggagaacacaacttggt |
178 |
Q |
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|| | ||||||| |||| ||||| |||| |||||| |||||| |
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| T |
41442828 |
ggcagttgacaagaatagaccatctggacaacacagcttggt |
41442869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 23833135 - 23833163
Alignment:
| Q |
81 |
aagagtgatgtctatagttttggagttgt |
109 |
Q |
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| T |
23833135 |
aagagtgatgtctatagttttggagttgt |
23833163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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