View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_16 (Length: 413)
Name: NF6203_low_16
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_16 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 41732701 - 41732322
Alignment:
| Q |
17 |
caatgatatttgaacaaccatttagtacaactttgatgaaagaataagaatgtataacgatcctaacttcatttttcatacatacggatgaaagtcaaaa |
116 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41732701 |
caatgatatttgaacaaccatttaatacaactttcatgagagaataagaatatacaacgatcctaacttcatttttcatacatacggatgaaagtcaaaa |
41732602 |
T |
|
| Q |
117 |
gttattcttagaccatgttttcaacaacaataataatcattttagtttttaataattaattnnnnnnnttgacatgtcaactatgaaagaaaaaac-taa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
41732601 |
gttattcttagaccatgttttcaacaacaataataatcattttagtttttaataattaattaaaaaaattgacatgtcaactatgaaagaaaaaacataa |
41732502 |
T |
|
| Q |
216 |
aacgaacttttccttccttgttctttctttcttctaaataaatcaaacttattagtagttgcgataaagagagtagaacaaaattttgggtgaggaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41732501 |
aacgaacttttccttccttgttctttctttcttctaaataaatcaaacttattagtagttgcgataaagagagtagaacaaaattttgggtgaggaaaaa |
41732402 |
T |
|
| Q |
316 |
agtaaatcgcgagaagattagaaaaagttggattaatttaacacagcgaagttaagttaatgtatttcccatggatgcac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41732401 |
agtaaatcgcgagaagattagaaaaagttggattaatttaacacagcgaagttaagttaatgtatttcccatggatgcac |
41732322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 45154425 - 45154454
Alignment:
| Q |
10 |
agatgaacaatgatatttgaacaaccattt |
39 |
Q |
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| T |
45154425 |
agatgaacaatgatatttgaacaaccattt |
45154454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 240187 - 240147
Alignment:
| Q |
15 |
aacaatgatatttgaacaaccatttagtacaactttgatga |
55 |
Q |
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| T |
240187 |
aacaatgatatttgaacaaccacttagtacaactttcatga |
240147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 25098681 - 25098718
Alignment:
| Q |
15 |
aacaatgatatttgaacaaccatttagtacaactttga |
52 |
Q |
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||||||||||||||||||||||||| ||||||| |||| |
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| T |
25098681 |
aacaatgatatttgaacaaccatttggtacaaccttga |
25098718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 48561682 - 48561723
Alignment:
| Q |
14 |
gaacaatgatatttgaacaaccatttagtacaactttgatga |
55 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
48561682 |
gaacaatgatatttgaacaaccatttggtataactttcatga |
48561723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 51571700 - 51571667
Alignment:
| Q |
14 |
gaacaatgatatttgaacaaccatttagtacaac |
47 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
51571700 |
gaacaatgatatttgaacaaccatttggtacaac |
51571667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 55511038 - 55511006
Alignment:
| Q |
17 |
caatgatatttgaacaaccatttagtacaactt |
49 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
55511038 |
caatgatatttgaacaaccatttggtacaactt |
55511006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 981649 - 981621
Alignment:
| Q |
17 |
caatgatatttgaacaaccatttagtaca |
45 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
981649 |
caatgatatttgaacaaccatttagtaca |
981621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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