View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_low_17 (Length: 407)
Name: NF6203_low_17
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 85 - 332
Target Start/End: Complemental strand, 13717694 - 13717436
Alignment:
| Q |
85 |
tagtatatatctgtttccttaaaaatcgaaatcgtaggttaatacgagtactatatataaagtgta--ata-gataaatgaaaaggtacatgtgtgcctc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||| || ||||||||||||| ||||||||||| |
|
|
| T |
13717694 |
tagtatatatctgtttccttaaaaatcgaaatcgtaggttaatagca-tactatatataaagtatataataagacaaatgaaaaggtatatgtgtgcctc |
13717596 |
T |
|
| Q |
182 |
atcatgtggctcaaactctcctacgtaaaggtgag---------ttgacgtatttgtgtgtaattaggtcatcagctataatgtgctttacgtcttaata |
272 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13717595 |
attatgtggctcaaactctcctacgtaaaggtgagactgcctggttgacgtatttgtgtgtaattaggtcatcagctataatgtgctttacgtcttaata |
13717496 |
T |
|
| Q |
273 |
tcacttaaattaggggtaacacatcaaatcattctatctcgagttcgaatcctcttcatt |
332 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
13717495 |
tcacttaaattaggggtaacacatcagatcaatctatctcgagttcgaatcctctccatt |
13717436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University