View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_19 (Length: 391)
Name: NF6203_low_19
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 4384819 - 4384677
Alignment:
| Q |
11 |
caaaggtagcaacatcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaag |
110 |
Q |
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| T |
4384819 |
caaaggtagcaacatcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaag |
4384720 |
T |
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| Q |
111 |
gaatggattgaatgttggtttatgagttaatgagcagggacaa |
153 |
Q |
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| T |
4384719 |
gaatggatagaatgttggtgcatgagttaatgagcagtgacaa |
4384677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 4111190 - 4111291
Alignment:
| Q |
229 |
tatttaaagaaaaaccatgagattttcattggcaatatcttacaagtttcacatccactgataaagtctctgaattattcagaactgaactatcatattt |
328 |
Q |
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| T |
4111190 |
tatttaaagaaaaaccatgagattttcatttgcaatatcttacaagtttcacatccactgctaaagtctcagaatt-ttcagaactgaactatcatattt |
4111288 |
T |
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| Q |
329 |
gat |
331 |
Q |
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| T |
4111289 |
gat |
4111291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 4384661 - 4384590
Alignment:
| Q |
304 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatatatcatcat |
375 |
Q |
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| T |
4384661 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatatatcatcat |
4384590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4110397 - 4110454
Alignment:
| Q |
18 |
agcaacatcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaa |
75 |
Q |
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| T |
4110397 |
agcaacatcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaa |
4110454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 4107224 - 4107305
Alignment:
| Q |
62 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatga |
143 |
Q |
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| T |
4107224 |
aaaacctgccacaaaaacttggtcaagttgattggatactgtgatgagggaatgcatagaatgttggtatatgagttcatga |
4107305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 4130405 - 4130489
Alignment:
| Q |
62 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatgagca |
146 |
Q |
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| T |
4130405 |
aaaacctgccacaaaaacttggtaaggttggttggattttgtgatgaaggattgcatagaatgttagtatatgagttcatgagca |
4130489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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