View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_22 (Length: 356)
Name: NF6203_low_22
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 23741326 - 23741650
Alignment:
| Q |
19 |
atgcaagaaattcaagctttccagatttactttgaaattgtgtataatccacaaaaacttagtagaattgtctttgaggctgcaactgttttaaaaacaa |
118 |
Q |
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| T |
23741326 |
atgcaagaaattcaagctttccatatttacttttaaattgtgtataatccacaaaaacttagttgaattgtcattgaggctgcaactgttttaaaaacaa |
23741425 |
T |
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| Q |
119 |
aataagttgttgataaaattccaaaactaacttttcttccttatgtaaaagaaaaataatgttttgctttagaatttcactatgttaaatttccacctca |
218 |
Q |
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| T |
23741426 |
aaacaattatcgataaaattccaaaactaacttttcttccttatgtaaaagaaaaataatgttttgctttagaatttcactatgttaaatttccacctct |
23741525 |
T |
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| Q |
219 |
gccaacagctgaatttacgttggcttttcgaccaccatttcacttggttctcttgtggatcttcaaatgctattcaaaataatttgaaaactttatcaca |
318 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23741526 |
gccaactgctgaatttacattggcttttcaaccaccatttcccttggttctcttgtggattttcaaatgctattcaaaataatttgaaaactttatcaca |
23741625 |
T |
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| Q |
319 |
aagagtagtttcgactaagtataat |
343 |
Q |
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| T |
23741626 |
aagagtagtttcgacgaagtataat |
23741650 |
T |
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