View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_low_24 (Length: 331)
Name: NF6203_low_24
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_24 |
 | |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 25358981 - 25359306
Alignment:
| Q |
1 |
tttgatgataaccaacaaatttgaatttcttgctcttgtcgtcaagtttggcttttttatcttctaaaatatgaacatatgtgacccctcaagtgtgttt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | |
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|
| T |
25358981 |
tttgatgataaccaacaaagttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtgaccc-tcaagtgtgata |
25359079 |
T |
|
| Q |
101 |
ttctagaatttcttcccctctatgcatcttgtgnnnnnnnncacacaattatttttggagatctattagttaattagactacacacgccacaacttcaat |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25359080 |
ttctagaatttcttccactctatgcatcttgtgatgtttttcacacactaattgttggagatctattagttaattagactacacacgccacaacttcaac |
25359179 |
T |
|
| Q |
201 |
caacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccata----atagctttgttattc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25359180 |
caacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatatatagctttgttattc |
25359279 |
T |
|
| Q |
297 |
ttgaaaaaataatcttatgatctctgct |
324 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
25359280 |
ttgaaaaaa-aatcttatgatctctgct |
25359306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 25399021 - 25399339
Alignment:
| Q |
1 |
tttgatgataaccaacaaatttgaatttcttgctcttgtcgtcaagtttggcttttttatcttctaaaatatgaacatatgtgacccctcaagtgtgttt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | |
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|
| T |
25399021 |
tttgatgataaccaacaaagttgaatttct-------gtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtgaccc-tcaagtgtgata |
25399112 |
T |
|
| Q |
101 |
ttctagaatttcttcccctctatgcatcttgtgnnnnnnnncacacaattatttttggagatctattagttaattagactacacacgccacaacttcaat |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25399113 |
ttctagaatttcttccactctatgcatcttgtgatgtttttcacacactaattgttggagatctattagttaattagactacacacgccacaacttcaac |
25399212 |
T |
|
| Q |
201 |
caacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccata----atagctttgttattc |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25399213 |
caataattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatatatagctttgttattc |
25399312 |
T |
|
| Q |
297 |
ttgaaaaaataatcttatgatctctgct |
324 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
25399313 |
ttgaaaaaa-aatcttatgatctctgct |
25399339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25618025 - 25618243
Alignment:
| Q |
1 |
tttgatgataaccaacaaatttgaatttcttgctcttgtcgtcaagtttggcttttttatcttctaaaatatgaacatatgtgacccctcaagtgtgttt |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| | |
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|
| T |
25618025 |
tttgatgataaccaaaaaagttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtga-ccctcaagtgtgata |
25618123 |
T |
|
| Q |
101 |
ttctagaatttcttcccctctatgcatcttgtgnnnnnnnncacacaattatttttggagatctattagttaattagactacacacgccacaacttcaat |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25618124 |
ttctagaatttcttccactctatgcatcttgtggtgtttttcacatacttattgttggagatctattagttaattagactacacacgccacaacttaaac |
25618223 |
T |
|
| Q |
201 |
caacaattattttggtagtt |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
25618224 |
ccacaattattttggtagtt |
25618243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25650752 - 25650968
Alignment:
| Q |
1 |
tttgatgataaccaacaaatttgaatttcttgctcttgtcgtcaagtttggcttttttatcttctaaaatatgaacatatgtgacccctcaagtgtgttt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||| || |||||||||||||||| || |||||||||||| | |
|
|
| T |
25650752 |
tttgatgataaccaacaaagttgaatttctagct--tgtcgtcaagtttggctttcttatcgtccaaaatatgaacatatgcga-ccctcaagtgtgata |
25650848 |
T |
|
| Q |
101 |
ttctagaatttcttcccctctatgcatcttgtgnnnnnnnncacacaattatttttggagatctattagttaattagactacacacgccacaacttcaat |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25650849 |
ttctagaatttcttccactctatgcatcttgcggtatttttcacacacttattgttggagatctattagttaattagactacacacgccacaacttcaac |
25650948 |
T |
|
| Q |
201 |
caacaattattttggtagtt |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
25650949 |
ccacaattattttggtagtt |
25650968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 25495282 - 25495366
Alignment:
| Q |
217 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
25495282 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctcgattgtacctttgttattcttgaaaaaa |
25495366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 25651231 - 25651318
Alignment:
| Q |
217 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaataa |
308 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
25651231 |
agttaattcacatcttcggtacgtccatatagctttta----tctgcaagctggttctctcgatagtacctttgttattcttgaaaaaataa |
25651318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 25495057 - 25495136
Alignment:
| Q |
142 |
cacacaattatttttggagatctattagttaattagactacacacgccacaacttcaa-tcaacaattattttggtagtt |
220 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25495057 |
cacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtt |
25495136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6439 - 6221
Alignment:
| Q |
1 |
tttgatgataaccaacaaatttgaatttcttgctcttgtcgtcaagtttggcttttttatcttctaaaatatgaacatatgtgacccctcaagtgtgttt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
6439 |
tttgatgataaccaacaaggttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtga-ccctcaagtgtgata |
6341 |
T |
|
| Q |
101 |
ttctagaatttcttcccctctatgcatcttgtgnnnnnnnncacacaattatttttggagatctattagttaattagactacacacgccacaacttcaat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6340 |
atctagaatttcttccactctatgcatcttgtggtgtttttcacacacttattgttggagatctattagttaattagactacacacgccacaacttcaac |
6241 |
T |
|
| Q |
201 |
caacaattattttggtagtt |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
6240 |
ccacaattattttggtagtt |
6221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 6070 - 5996
Alignment:
| Q |
217 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
6070 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgtaagctggttctctcgattttacctttgttatt |
5996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 426 - 322
Alignment:
| Q |
217 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaa-aaaataatcttatg |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
426 |
agttaatccatatcctcggtacgtccatatagctttta----tctgcaagctggttctctccataatagctttgttattcttgaaaaaaaaaaacttatg |
331 |
T |
|
| Q |
316 |
atctctgct |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
330 |
atctctgct |
322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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