View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_25 (Length: 331)
Name: NF6203_low_25
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 29720324 - 29720018
Alignment:
| Q |
11 |
gatgaatataatctaacttgtgatgtactaatactagctgctactagatcttgatatatatgtgaaaatggaaaattctgcacatacaacaatcaaaaac |
110 |
Q |
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| T |
29720324 |
gatgaatataatctaacttgtgatgtactaatactagctgctactagatctttatatttatgtgaaaatggaaaattctgcacatacaacaatcaaaaac |
29720225 |
T |
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| Q |
111 |
acatttaatagataaaatattgaacaaaataatttagactcaaacaaagaaatataagttactattgtgtagtacctgcataaatggcattgtggttgaa |
210 |
Q |
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| T |
29720224 |
atatttaatagataaaatattgaacaaaataatttagactcaaacaaagaaatataagttactattgtgtagtacctgcataattggcatggtggttgaa |
29720125 |
T |
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| Q |
211 |
tagttttgtgtcacaggactacacttgtgaatgcctttgcttcttttgtattttttctccacacaactctttaggcctgccttttacccgcgatttacca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29720124 |
tagttttgtgtcacaggactacacttgtgaatgcctttgcttcttttgtattttttctccacacaactctttaggcctgccttttacccgcgatttacca |
29720025 |
T |
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| Q |
311 |
tccttct |
317 |
Q |
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||||||| |
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| T |
29720024 |
tccttct |
29720018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 29683574 - 29683523
Alignment:
| Q |
11 |
gatgaatataatctaacttgtgatgtactaatactagctgctactagatctt |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29683574 |
gatgaatataatctaacttgtgatgtactaatactagctgctactagatctt |
29683523 |
T |
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