View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_low_31 (Length: 282)
Name: NF6203_low_31
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_31 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9305985 - 9305724
Alignment:
| Q |
1 |
gctaattgatgactaatgaggttttctaactgaaaacatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
9305985 |
gctaattgatgactaatgaggttttctaactgaaaacatgccagctatattcatcatgaacctcaaactcatttcaatatcataagcatcttgcaaaata |
9305886 |
T |
|
| Q |
101 |
tcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9305885 |
tcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacac |
9305786 |
T |
|
| Q |
201 |
catcactaacaagtgctgtatattttattaaaaatcattatcatatgaatttaataattatc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9305785 |
catcactaacaagtgctgtatattttattaaaaatcattatcatatgaatttaataattatc |
9305724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9352510 - 9352252
Alignment:
| Q |
1 |
gctaattgatgactaatgaggttttctaactgaaaacatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9352510 |
gctaattgatgactaatgaggttttctaactgaaaacatgccagctatattcatcatgaacctcaaactcatttcaatatcataagcatcttgcagaata |
9352411 |
T |
|
| Q |
101 |
tcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacac |
200 |
Q |
| |
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||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||| |
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|
| T |
9352410 |
tcacatgcagtatcattcacatattcacaatgttgggaaaacatgtaacaagcttaccatatttaaagg--aaatcatgcaggcaccacatgctctacac |
9352313 |
T |
|
| Q |
201 |
catcactaacaagtgctgtatattttattaaaaatcattatcatatgaatttaataattatc |
262 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
9352312 |
catcactaacaagtgctgtttattttatt-aatttcattatcatatgaatttaataattatc |
9352252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 9293487 - 9293287
Alignment:
| Q |
31 |
tgaaaacatgccagctatattcatcatgaacctcatactcatttcaatat-cataagcatcttgcagaatatcacatgcagtatcattaataaattcaca |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||| |||||||| |||||||||| ||||||||||||||||| |
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|
| T |
9293487 |
tgaagacatgccagctatattcatcatgcacctcaaactcatttcaatattcata-gcatctagcagaataacacatgcagtctcattaataaattcaca |
9293389 |
T |
|
| Q |
130 |
atgttggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||| |||||| ||||||||| |
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|
| T |
9293388 |
atgttggactaacatgtaacaagcttaccatattcaaatggcaattcatgtaggcaccacatgctctacaccatcattaacaactgctgtctattttatt |
9293289 |
T |
|
| Q |
230 |
aa |
231 |
Q |
| |
|
|| |
|
|
| T |
9293288 |
aa |
9293287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 9288961 - 9288766
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatat-cataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgtt |
134 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
9288961 |
acatgccagctatattcatcatgcatctcaaactcatttcaatattcata-gcatcttgcagaataacacatgcagtatcattaataaattctcaatgtt |
9288863 |
T |
|
| Q |
135 |
ggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttattaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||| |||||| |||||| ||||||||||| |
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|
| T |
9288862 |
ggactaacatgtaacaagcttaccatattcaaatggcaatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaa |
9288766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 9298089 - 9297896
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttg |
135 |
Q |
| |
|
||||| ||||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
9298089 |
acatggcagctatattcatcatgcatctcaaactcattttaatatcataagcatcttgcagaataacacatgcagtatcattaatatattcacaatgttg |
9297990 |
T |
|
| Q |
136 |
gactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| | | | |||||||||| |||||||| |||||| ||||| |||||||||| |
|
|
| T |
9297989 |
gactaacatgtaacaagcttaccatattcaaagggaaatccatattgacaccacatgctcaacaccatccttaacaactgctgcatattttatt |
9297896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 9373067 - 9373260
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatat-cataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgtt |
134 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
9373067 |
acatgccagctatattcatcatgcatctcaaactcattttaatattcatg-gcatcttgcagaataacacatgcagtatcattaataaattcacaatgtt |
9373165 |
T |
|
| Q |
135 |
ggactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||| ||| | ||||||||| |
|
|
| T |
9373166 |
ggactaacatgtaacaagcttaccatattcaaaggaaaattcatgtaggcaccacatgctctactccatcattaacaactgccctctattttatt |
9373260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 36 - 262
Target Start/End: Complemental strand, 9302326 - 9302107
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttg |
135 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||| |
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|
| T |
9302326 |
acatgccagctatattcatcatgcacctcaaactcatttcaatatcataagcatcttgcagaatatcacatgcaatatcattcacatattcacaatgttg |
9302227 |
T |
|
| Q |
136 |
gactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttattaaaaat |
235 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| || || |||| ||||||||||||||||||||||||||||||||| |||||||||| || | |
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|
| T |
9302226 |
-----acatcaaacaagcttaccatatttaaagggaaa-tcctgcaggcaccacatgctctacaccatcactaacaagtgctgcatattttatt-aattt |
9302134 |
T |
|
| Q |
236 |
cattatcatatgaatttaataattatc |
262 |
Q |
| |
|
|||||| |||| ||||||| ||||||| |
|
|
| T |
9302133 |
cattattatatcaatttaacaattatc |
9302107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 9367149 - 9367362
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttg |
135 |
Q |
| |
|
|||||||||||||||||||| || |||||| |||||||| |||||||| |||||| || ||||||| ||||||| | | ||||||||||||| |
|
|
| T |
9367149 |
acatgccagctatattcatcgtgcacctcaaactcattttaatatcat--------tgcagattaacacatgctatatcattcaaatattcacaatgttg |
9367240 |
T |
|
| Q |
136 |
gactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttattaaaaat |
235 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| || | |
|
|
| T |
9367241 |
ggaaaacatctaacaagcttaccatattcaaaggggaa-tcatgcaggcaccacatgctctacaccatcaccgacaagtgcttcatattttatt-aattt |
9367338 |
T |
|
| Q |
236 |
cattatcatatgaatttaataatt |
259 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9367339 |
cattatcatatgaatttaataatt |
9367362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 9309552 - 9309711
Alignment:
| Q |
71 |
atttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaaggg |
170 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||| ||||||||| | |||||||||||||| | | | ||||||||||||||||||||||| |
|
|
| T |
9309552 |
atttcaatatcaga-gcatcttgcagagtatcacatgcaatatcattaacatattcacaatgttgggtagaggtatgacaagcttaccatattcaaaggg |
9309650 |
T |
|
| Q |
171 |
aaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttattaa |
231 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||| | ||||||||| | ||||||||||| |
|
|
| T |
9309651 |
aaatccatgcaggcaccacatgctctaaaccatgattaacaagtgataactattttattaa |
9309711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 9332751 - 9332561
Alignment:
| Q |
36 |
acatgccagctatattcatcatgaacctcatactcatttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttg |
135 |
Q |
| |
|
||||||||||||||||||||||| | |||| | |||||| |||||||| ||||||||||| |||| ||||||| || |||| | | |||||||||| || |
|
|
| T |
9332751 |
acatgccagctatattcatcatgcatctcaaattcattttaatatcat-agcatcttgcataataccacatgcgataccattcacatattcacaatgctg |
9332653 |
T |
|
| Q |
136 |
gactaacatgtaacaagcttaccatattcaaagggaaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttat |
228 |
Q |
| |
|
| ||||| ||||||| |||| ||||||||| ||||| |||| |||| |||||||||||| ||||||| ||||||| ||| ||||||||| |
|
|
| T |
9332652 |
ggaaaacatctaacaaggttactatattcaaaaggaaa-tcatacaggcaccacatgctctaaaccatcatcaacaagtactgcatattttat |
9332561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 9348588 - 9348731
Alignment:
| Q |
71 |
atttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaaggg |
170 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||||||||| | |||||||||||||| | || | |||| ||||||||||||||| || |
|
|
| T |
9348588 |
atttcaatatcata-gcatcttgcagagtatcacatgcaatatcattaacatattcacaatgttgggtagagatatgacaaccttaccatattcaaatgg |
9348686 |
T |
|
| Q |
171 |
aaattcatgtaggccccacatgctctacaccatcactaacaagtg |
215 |
Q |
| |
|
||||||||| || | ||||||||||| ||||| | ||||||||| |
|
|
| T |
9348687 |
aaattcatgcagccagcacatgctctaaaccatgattaacaagtg |
9348731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 9355958 - 9356101
Alignment:
| Q |
71 |
atttcaatatcataagcatcttgcagaatatcacatgcagtatcattaataaattcacaatgttggactaacatgtaacaagcttaccatattcaaaggg |
170 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||| ||||||||| | |||||||||||||| | || | |||| ||||||||||||||| || |
|
|
| T |
9355958 |
atttcaatatcaga-gcatcttgcagagtatcacatgcaatatcattaacatattcacaatgttgggtagagatatgacaaccttaccatattcaaatgg |
9356056 |
T |
|
| Q |
171 |
aaattcatgtaggccccacatgctctacaccatcactaacaagtg |
215 |
Q |
| |
|
||||||||| || | ||||||||||| ||||| | ||||||||| |
|
|
| T |
9356057 |
aaattcatgcagccagcacatgctctaaaccatgattaacaagtg |
9356101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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