View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_34 (Length: 256)
Name: NF6203_low_34
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_34 |
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| [»] scaffold0466 (1 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: scaffold0466 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 6619 - 6431
Alignment:
| Q |
55 |
acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctca |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
6619 |
acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattcttgaaggaaaccgtattcctttgagtgagtaataacgtctcg |
6520 |
T |
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| Q |
155 |
ctctccttcttcgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgat |
246 |
Q |
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| T |
6519 |
ctctccttcttcgatgaagaccacatctcgactaatttatatcttgt---tgttcatttttgacaacatgattccctatgaactttgatgat |
6431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 25392139 - 25392308
Alignment:
| Q |
77 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaagacc |
176 |
Q |
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| T |
25392139 |
ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaaccgtattccttttggtgagtaataacgtctcactctccttcttcgatgaagacc |
25392238 |
T |
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| Q |
177 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgat |
246 |
Q |
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| T |
25392239 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgat |
25392308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 25358820 - 25358989
Alignment:
| Q |
77 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaagacc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
25358820 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacatctcactttccttcttcgatgaagacc |
25358919 |
T |
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| Q |
177 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgat |
246 |
Q |
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| T |
25358920 |
acatctcgactaatttatatcttgttgatgttcatttttgacaacatgattccctttgaactttgatgat |
25358989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 25650621 - 25650707
Alignment:
| Q |
55 |
acaattttggtaagtgtgacactt-----gttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta |
136 |
Q |
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| T |
25650621 |
acaattttggtaagtgtgacacttagcttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta |
25650707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 25650704 - 25650760
Alignment:
| Q |
190 |
tttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgat |
246 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
25650704 |
tttatatcttgttgttgttcattttttaaaacatgattccctttgaactttgatgat |
25650760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 25398988 - 25399029
Alignment:
| Q |
205 |
tgttcatttttgacaacatgattccctttgaactttgatgat |
246 |
Q |
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| T |
25398988 |
tgttcatttttgacaacatgattccctttgaactttgatgat |
25399029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 25617952 - 25617984
Alignment:
| Q |
70 |
gtgacacttgttcaacttctctaaatttttctt |
102 |
Q |
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| T |
25617952 |
gtgacacttgttcaacttctctaaatttttctt |
25617984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 604 - 542
Alignment:
| Q |
166 |
cgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc |
228 |
Q |
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| T |
604 |
cgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc |
542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 656 - 605
Alignment:
| Q |
57 |
aattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaa |
108 |
Q |
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| T |
656 |
aattttggtaagcgtgacacttgttcaacttctctaaatttttcttcttcaa |
605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 32973838 - 32973722
Alignment:
| Q |
75 |
acttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaaga |
174 |
Q |
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||||||| ||| |||||| || ||||||||||||||| ||||| |||| ||||||||||| |||||| ||| || || | |||||||||| |||| |
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| T |
32973838 |
acttgttgaacgtctctagatgtttcttcttcaaattatggaaagaaattgtattcctttttgtgagttctaaattcccattttccttcttcgtcaaaga |
32973739 |
T |
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| Q |
175 |
ccacatctcgactaatt |
191 |
Q |
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| T |
32973738 |
caacatctcgtctaatt |
32973722 |
T |
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