View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_36 (Length: 244)
Name: NF6203_low_36
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 11242157 - 11242373
Alignment:
| Q |
10 |
aggagcagagaaattgaagaaaagnnnnnnnnnntgaatagttggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaa |
109 |
Q |
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| T |
11242157 |
aggagcagagaaattgaagaaaagaaaaaaaaaatgaatagctggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaa |
11242256 |
T |
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| Q |
110 |
aagtgcacgatccggagaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatg |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11242257 |
aagtgcacgatccggagaccgtatgtttttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatg |
11242356 |
T |
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| Q |
210 |
cattgtcttgaggtttt |
226 |
Q |
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||||||||||||||||| |
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| T |
11242357 |
cattgtcttgaggtttt |
11242373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 11269197 - 11269010
Alignment:
| Q |
44 |
tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatc-----cggagaccgtgtgttt |
137 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || | || ||||| |||| |
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| T |
11269197 |
tgaatagctggaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgctatgcaggccgtgcgttt |
11269098 |
T |
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| Q |
138 |
ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggtttt |
226 |
Q |
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| T |
11269097 |
ttgctgttagctagagctgttacaaaactctttggttttcctatttttatgcttgt-aatatgagtttaaggcattgtcttaaggtttt |
11269010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 11281004 - 11281191
Alignment:
| Q |
44 |
tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtgtgttt |
137 |
Q |
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||||||| | ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || | | ||||| |||| |
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| T |
11281004 |
tgaatagctagaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgttatgcaagccgtgcgttt |
11281103 |
T |
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| Q |
138 |
ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggtttt |
226 |
Q |
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| T |
11281104 |
ttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgt-aatatgagtttaatgcattgtgttaaggtttt |
11281191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 9798816 - 9798678
Alignment:
| Q |
88 |
attttaacacttggaagctgaaaagtgcacgatccgg-agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttt-tcctatttta |
185 |
Q |
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||||||||||||||||| ||||||||||||| | | |||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
9798816 |
attttaacacttggaagttgaaaagtgcacggttgtgcagaccgtgcgtttttgctgtcagctagagctgttacaaaactctttggtttctcctatttta |
9798717 |
T |
|
| Q |
186 |
aagcttgtaaatccgagtttaatgcattgtcttgaggtt |
224 |
Q |
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| T |
9798716 |
aagcttgtaaattcgagtttaatgccttgtctagaggtt |
9798678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 15201683 - 15201823
Alignment:
| Q |
89 |
ttttaacacttggaagctgaaaagtgcacgatcc-----ggagaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttttcctattt |
183 |
Q |
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|||||||||||| ||||||||||||||||| || | | |||||| ||||||| ||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
15201683 |
ttttaacacttgtaagctgaaaagtgcacggtctactgtgcataccgtgcgtttttgttgtcaactagagctgttacaaaactctttggttttcctattt |
15201782 |
T |
|
| Q |
184 |
taaagcttgtaaatccgagtttaatgcattgtcttgaggtt |
224 |
Q |
| |
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||||| |||||||||| |||||||| ||||||||||||| |
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| T |
15201783 |
taaagtttgtaaatccaagtttaatatcttgtcttgaggtt |
15201823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 27318397 - 27318494
Alignment:
| Q |
125 |
agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggtttt-cctattttaaagcttgtaaatccgagtttaatgcattgtcttgag |
221 |
Q |
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|||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
27318397 |
agaccgtgcgtttttgctgtcagctggagctgttacaaaactctttggttttccctattttaaagcttgtaaattcgagtttaatgccttgtcttgag |
27318494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 16999468 - 16999377
Alignment:
| Q |
135 |
tttttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggtttt |
226 |
Q |
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||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16999468 |
tttttgctgtcagcaggagatgttacaaaactcttcggttttcctattttaaagcttgtaaatccgagtttaatgtcatgtcttgaggtttt |
16999377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 42687950 - 42687886
Alignment:
| Q |
162 |
aaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggtttt |
226 |
Q |
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||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
42687950 |
aaactctttggttttcccattttaaagcttataaatatgagtttaatgtcttgtcttgaggtttt |
42687886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 21276696 - 21276770
Alignment:
| Q |
153 |
gctgttagaaaactctttggttttcc-tattttaaagcttgtaaatccgagtttaatgcattgtcttgaggtttt |
226 |
Q |
| |
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||||||| |||||||||||||||||| || ||||||| |||||| | || |||||||| |||||||||| |||| |
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| T |
21276696 |
gctgttacaaaactctttggttttccttaatttaaagtttgtaatttcgtgtttaatgtcttgtcttgagatttt |
21276770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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