View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_37 (Length: 241)
Name: NF6203_low_37
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34116087 - 34115861
Alignment:
| Q |
1 |
ttccaccaaatgtgcatcaccaattatattcaaggatacaaaattttctcatggaaccaaactattaaatctgcattagaacttctatttcatcaacttc |
100 |
Q |
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| T |
34116087 |
ttccaccaaatgtgcatcaccaattatattcaaggatacaaaattttctcatggaaccaaactattaaatctgcattagaacttctatttcatcaacttc |
34115988 |
T |
|
| Q |
101 |
aaagatctagtactctctttttccaacaaacataagggttcataatagtaaattaaattgcaataaaacaaatgaaggaaacaagatagttcctctactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34115987 |
aaagatctagtactctctttttccaacaaacataagggttcataatagtaaattaaattgcaataaaacaaatgaaggaaacaagatagttcctctactc |
34115888 |
T |
|
| Q |
201 |
atcaactaactgatcaaattttggatg |
227 |
Q |
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|
||||||||||||||||||||||||||| |
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| T |
34115887 |
atcaactaactgatcaaattttggatg |
34115861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 34150155 - 34150092
Alignment:
| Q |
164 |
taaaacaaatgaaggaaacaagatagttcctctactcatcaactaactgatcaaattttggatg |
227 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
34150155 |
taaaacaaatgaaggaaagaagattgttcgtctactcatcaactaaatgatcaaattttggatg |
34150092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 34162771 - 34162708
Alignment:
| Q |
164 |
taaaacaaatgaaggaaacaagatagttcctctactcatcaactaactgatcaaattttggatg |
227 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
34162771 |
taaaacaaatgaaggaaagaagattgttcgtctactcatcaactaaatgatcaaattttggatg |
34162708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 34150235 - 34150175
Alignment:
| Q |
101 |
aaagatctagtactctctttt-tccaacaaaca-taagggttcataatagtaaattaaatt |
159 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||||||| |||||||||||||||| |
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| T |
34150235 |
aaagatctagtactcaattttctccaacaaaaaataagggttcaaaatagtaaattaaatt |
34150175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 34162851 - 34162791
Alignment:
| Q |
101 |
aaagatctagtactctctttt-tccaacaaaca-taagggttcataatagtaaattaaatt |
159 |
Q |
| |
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||||||||||||||| |||| ||||||||| | |||||||||| |||||||||||||||| |
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| T |
34162851 |
aaagatctagtactcaattttctccaacaaaaaataagggttcaaaatagtaaattaaatt |
34162791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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