View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6203_low_4 (Length: 633)
Name: NF6203_low_4
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 53036971 - 53036362
Alignment:
| Q |
18 |
gtaatcgatgtgcgggataaggtaaggataatattcacaagaaggtgaaaagtcacctagttcggataaggttaacgacgattctgcttcgatgaattga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036971 |
gtaatcgatgtgcgggataaggtaaggataatattcacaagaaggtgaaaagtcacctagttcggataaggttaacgacgattctgcttcgatgaattga |
53036872 |
T |
|
| Q |
118 |
gcacccaatgagttgcattcgacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036871 |
gcacccaatgagttgcattcgacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagt |
53036772 |
T |
|
| Q |
218 |
ctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036771 |
ctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatc |
53036672 |
T |
|
| Q |
318 |
ccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatgatgac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036671 |
ccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatgatgac |
53036572 |
T |
|
| Q |
418 |
atgtttgctatcatatttctgtcacactttttgttagtatagtttgttggatcaaaagttcattggaggtgtgttatata--tatactaattactaagag |
515 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
53036571 |
atgtttgctatcatatttctgtcacactttttgatagtatagtttgttggatcaaaaattcattgcaggtgtgttatatatatatactaattactaagag |
53036472 |
T |
|
| Q |
516 |
gttgtggttaattgggaaaattgaataaacatgagaaaataaaaatgttttgtctttgttgccgtaaatggtgtgttcagttggatgaaatgaatttcct |
615 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53036471 |
gttgtggttaattgggaaaattgaataaacttgagaaaataaaaatgttttgtctttgttgccgtaaatgatgtgttcagttggatgaaatgaatttcct |
53036372 |
T |
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| Q |
616 |
gtgatgatgt |
625 |
Q |
| |
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|||||||||| |
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| T |
53036371 |
gtgatgatgt |
53036362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 39996624 - 39996983
Alignment:
| Q |
18 |
gtaatcgatgtgcgggataaggtaaggataatattcacaagaaggtgaaaagtcacctagttcggataaggttaacgacgattctgcttcgatgaattga |
117 |
Q |
| |
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|||||| ||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
39996624 |
gtaatcaatgtgtgggataaggtaacggtaatattccgaagaaggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattga |
39996723 |
T |
|
| Q |
118 |
gcacccaatgagttgcattcgacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagt |
217 |
Q |
| |
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||||||||||||||||||||| |||||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
39996724 |
acacccaatgagttgcattcgagatcaaaacgaccatttcctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgact |
39996823 |
T |
|
| Q |
218 |
ctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatc |
317 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||| ||||||| ||||||| |||| ||||||| ||||| |
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| T |
39996824 |
ctttcaaagtggtggcgattttagtgggggaggtaagccagttttttgggggctggtaaaagtatattgttggcacgtgtgctatgattccaatctgatc |
39996923 |
T |
|
| Q |
318 |
ccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaaca |
377 |
Q |
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|||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| |
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| T |
39996924 |
ccattcggataatggtaaacggccacaccatgttggttccattggtctcacatagtaaca |
39996983 |
T |
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Back To:
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