View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6203_low_49 (Length: 220)

Name: NF6203_low_49
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6203_low_49
NF6203_low_49
[»] chr6 (5 HSPs)
chr6 (19-207)||(34116108-34116296)
chr6 (19-109)||(34143094-34143187)
chr6 (19-109)||(34155710-34155803)
chr6 (127-192)||(2252018-2252083)
chr6 (125-192)||(31462374-31462439)
[»] chr8 (2 HSPs)
chr8 (119-192)||(27707860-27707933)
chr8 (119-192)||(25029714-25029787)
[»] chr5 (3 HSPs)
chr5 (119-186)||(8117504-8117571)
chr5 (136-192)||(37325861-37325917)
chr5 (148-192)||(30874531-30874575)
[»] chr4 (3 HSPs)
chr4 (119-189)||(51850378-51850448)
chr4 (136-191)||(3125298-3125353)
chr4 (119-162)||(52643529-52643572)
[»] scaffold0252 (1 HSPs)
scaffold0252 (119-195)||(16550-16626)
[»] chr1 (3 HSPs)
chr1 (124-192)||(19636175-19636243)
chr1 (125-192)||(32226045-32226112)
chr1 (119-189)||(25710741-25710811)
[»] chr2 (2 HSPs)
chr2 (126-192)||(12732709-12732775)
chr2 (119-192)||(45709720-45709793)
[»] scaffold0072 (1 HSPs)
scaffold0072 (119-192)||(5971-6044)
[»] scaffold0024 (1 HSPs)
scaffold0024 (145-189)||(101734-101778)
[»] chr7 (2 HSPs)
chr7 (119-192)||(24375643-24375716)
chr7 (119-191)||(19835450-19835522)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 34116296 - 34116108
Alignment:
Q  19 attacaaccttaataaagacattttgatctttacatgcatgggctccgatgtgttgacgttagaggcttgtccagtctatgacggtgctagtgatatcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34116296 attacaaccttaataaagacattttgatctttacatgcatgtgctccgatgtgttgacgttagaggcttgtccagtctatgacggtgctagtgatatcta 34116197  T
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggattcaccactcctatgct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34116196 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggattcaccactcctatgct 34116108  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 34143187 - 34143094
Alignment:
Q  19 attacaaccttaataaagacattttgatctttacatgcatgggctcc---gatgtgttgacgttagaggcttgtccagtctatgacggtgctag 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||||    
T  34143187 attacaaccttaataaagacattttgatctttacatgcatgtgctccgatgatgtgttgacgttagaggcttgtccagcctatgacggtgctag 34143094  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 34155803 - 34155710
Alignment:
Q  19 attacaaccttaataaagacattttgatctttacatgcatgggctcc---gatgtgttgacgttagaggcttgtccagtctatgacggtgctag 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||||    
T  34155803 attacaaccttaataaagacattttgatctttacatgcatgtgctccgatgatgtgttgacgttagaggcttgtccagcctatgacggtgctag 34155710  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 2252083 - 2252018
Alignment:
Q  127 atttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||||| |||||| |||||||||||||| |||||||||| ||| ||||||||||||||||| ||||    
T  2252083 atttgtaataccgctatacgctatcccacttttggggtcagccgctacgcaccgctatccgagatt 2252018  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 31462439 - 31462374
Alignment:
Q  125 ctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||||||||||||   ||||| |||||||| |||||||||| ||||||||||||||||||| ||||||    
T  31462439 ctatttgtcatacg--tatacactatcccacttttggggtcggccactacgcaccgctatctgggatt 31462374  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 27707933 - 27707860
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| |||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  27707933 tgaccgctatttgtcataccgctatacgctatcccacatttggggtcggccactacgcaccgctatccgggatt 27707860  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 25029714 - 25029787
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| |||||||||||||| | ||||| ||||||||||||||||||  ||| ||| ||||||||||||||||||    
T  25029714 tgaccgctatttgtcatactgctatacactatcccatttttggggttagccgctaggcaccgctatccgggatt 25029787  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 8117504 - 8117571
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatcc 186  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  8117504 tgaccgctatttgtcataccgctatacgctatcccatttttggggttggccactacgcaccgctatcc 8117571  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 37325861 - 37325917
Alignment:
Q  136 accgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| |||| ||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  37325861 accgctatatgctatcccacttttggggtcggccgctacgcaccgctatccgggatt 37325917  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 30874575 - 30874531
Alignment:
Q  148 tatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||    
T  30874575 tatcccatttttgggatcggccactacgcaccactatccgggatt 30874531  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 51850448 - 51850378
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccggg 189  Q
    |||| |||||||||||||||  |||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  51850448 tgaccgctatttgtcataccactatacgctatcccacttttggggtcggccgctacgcaccgctatccggg 51850378  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 3125298 - 3125353
Alignment:
Q  136 accgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggat 191  Q
    |||| |||||||||| ||| |||||||||  ||| |||||||||||||||||||||    
T  3125298 accgctatacgctattccacttttggggttggccgctacgcaccgctatccgggat 3125353  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 52643529 - 52643572
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggg 162  Q
    |||||||| |||| |||||||||||||||||||||| |||||||    
T  52643529 tgactgctttttggcataccgttatacgctatcccacttttggg 52643572  T

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Target: scaffold0252 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 16626 - 16550
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggattcac 195  Q
    |||| |||||||||||||||  |||||||||||||| |||||||||| ||||||| || |||| |||||||||||||    
T  16626 tgaccgctatttgtcatacctctatacgctatcccacttttggggtcggccactatgctccgccatccgggattcac 16550  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 19636175 - 19636243
Alignment:
Q  124 gctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||||||||||||| | |||||||||||| || ||||||||| ||  ||||||||||||||||||||||    
T  19636175 gctatttgtcatactgctatacgctatcctatgtttggggtcggctgctacgcaccgctatccgggatt 19636243  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 32226112 - 32226045
Alignment:
Q  125 ctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||||||||| |||| |||||||||||||| |||||||||| ||| |||| |||||||||||| ||||    
T  32226112 ctatttgtcaaaccgctatacgctatcccacttttggggtcggccgctacacaccgctatccgagatt 32226045  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 25710811 - 25710741
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccggg 189  Q
    |||| ||||||||| |||| | |||||||||| |||  ||||||||| ||| ||||| |||||||||||||    
T  25710811 tgaccgctatttgttatactggtatacgctattccacctttggggtcggccgctacgaaccgctatccggg 25710741  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 12732775 - 12732709
Alignment:
Q  126 tatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||||||||||||| |||||||||||||| |||||||||  ||  |||| |||||||||||||||||    
T  12732775 tatttgtcataccgctatacgctatcccacttttggggttggctgctacacaccgctatccgggatt 12732709  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 45709793 - 45709720
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| ||| ||||| |||||||||||| ||||||||||||||||||| ||| ||| |||| || ||||| ||||    
T  45709793 tgaccgctctttgttataccgttatacactatcccatttttggggtcggccgctatgcactgccatccgagatt 45709720  T

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Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 6044 - 5971
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| |||||||||||||||| |||||||||||| | ||||||| || ||| |||||| | |||||||||||||    
T  6044 tgaccgctatttgtcataccgctatacgctatccaacttttgggatcggccgctacgctctgctatccgggatt 5971  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 101734 - 101778
Alignment:
Q  145 cgctatcccatttttggggtctgccactacgcaccgctatccggg 189  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||    
T  101734 cgctatcccatttttggggtctgccgctacacaccgctatccggg 101778  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 24375643 - 24375716
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggatt 192  Q
    |||| ||||||||| |||||| |||||||||||||| |||||||||  ||| |||||  | |||||||||||||    
T  24375643 tgaccgctatttgttataccgctatacgctatcccacttttggggttggccgctacgtgctgctatccgggatt 24375716  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 19835450 - 19835522
Alignment:
Q  119 tgactgctatttgtcataccgttatacgctatcccatttttggggtctgccactacgcaccgctatccgggat 191  Q
    |||| |||||||||||||| | ||||||||||||   |||||||||| ||| ||||||||| ||||| |||||    
T  19835450 tgaccgctatttgtcatacagctatacgctatcctgcttttggggtcggccgctacgcaccactatctgggat 19835522  T

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