View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6203_low_5 (Length: 586)
Name: NF6203_low_5
Description: NF6203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6203_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 42762291 - 42761731
Alignment:
| Q |
19 |
ctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaattaccacctcataagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762291 |
ctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaattaccacctcataagtt |
42762192 |
T |
|
| Q |
119 |
gtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctccagaggatgcgtaagaatgcttttgctttatgttgaccttctcaaataacnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42762191 |
gtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctgcagaggatgcgtaagaatgcttttgctttatgttgaccttctcaaatatcttt |
42762092 |
T |
|
| Q |
219 |
nnnnnatagtaatctataagtttgatcttgtaacttaagtaataaattttcaatctcctcagagactgttttaaaatgactatttcannnnnnnnnnnnn |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762091 |
tttttatagtaatctataagtttgatcttgtaacttaagtaataaattttcaatctcctcagagactgttttaaaatgactatttcattttttttagttc |
42761992 |
T |
|
| Q |
319 |
nnnn--gcaatcatggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42761991 |
ttttttgcaatcatggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagc |
42761892 |
T |
|
| Q |
417 |
ttctcgtgtaggtgctattggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42761891 |
ttctcgtgtaggtgctattggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagc |
42761792 |
T |
|
| Q |
517 |
tttaaagatggagatttaatttttaaatacgtccataacaccaagtaatttttctcctatg |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
42761791 |
tttaaagatggagatttaatttttaaatacgtcaataacacaaagtaatttttctcctatg |
42761731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 37 - 573
Target Start/End: Complemental strand, 42743446 - 42742908
Alignment:
| Q |
37 |
tttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgc |
136 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
42743446 |
tttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcctcataagttgtacccattgattagtgc |
42743347 |
T |
|
| Q |
137 |
tgctgatgtcaaatttgatcatgtgtctccagaggatgcgtaagaatgcttttgctttatgttgac--cttctcaaataacnnnnnnnnatagtaatcta |
234 |
Q |
| |
|
|||||||| |||||||||||||||||| | | || |||||||||| |||| |||| |||||| |||||||||||| |||| || | |
|
|
| T |
42743346 |
tgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaatactttcattttaagttgacaccttctcaaataaattttgtg--tagttgtcca |
42743249 |
T |
|
| Q |
235 |
taagtttgatcttgtaacttaa-gtaataaattttcaatctcctcagagactgttttaaaatgactatttca-nnnnnnnnnnnnnnnnngcaatcatgg |
332 |
Q |
| |
|
| | ||||||||||||| ||| |||| |||||||||||||| ||||||| ||||| |||||| ||||| | ||| | |||| |
|
|
| T |
42743248 |
tcggcttgatcttgtaacctaaagtaacaaattttcaatctcttcagagatagttttcaaatgattattttattttatgcagcctcctttgcattaatgg |
42743149 |
T |
|
| Q |
333 |
agctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgct |
432 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743148 |
gtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgct |
42743049 |
T |
|
| Q |
433 |
attggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatt |
532 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
42743048 |
gttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacg |
42742949 |
T |
|
| Q |
533 |
taatttttaaatacgtccataacaccaagtaatttttctcc |
573 |
Q |
| |
|
| ||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
42742948 |
tcattttaaaatatgtcaattacaccaagtaatttttctcc |
42742908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 37 - 573
Target Start/End: Complemental strand, 42752805 - 42752267
Alignment:
| Q |
37 |
tttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgc |
136 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
42752805 |
tttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcctcataagttgtacccattgattagtgc |
42752706 |
T |
|
| Q |
137 |
tgctgatgtcaaatttgatcatgtgtctccagaggatgcgtaagaatgcttttgctttatgttgac--cttctcaaataacnnnnnnnnatagtaatcta |
234 |
Q |
| |
|
|||||||| |||||||||||||||||| | | || |||||||||| |||| |||| |||||| |||||||||||| |||| || | |
|
|
| T |
42752705 |
tgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaatactttcattttaagttgacaccttctcaaataaattttgtg--tagttgtcca |
42752608 |
T |
|
| Q |
235 |
taagtttgatcttgtaacttaa-gtaataaattttcaatctcctcagagactgttttaaaatgactatttca-nnnnnnnnnnnnnnnnngcaatcatgg |
332 |
Q |
| |
|
| | ||||||||||||| ||| |||| |||||||||||||| ||||||| ||||| |||||| ||||| | ||| | |||| |
|
|
| T |
42752607 |
tcggcttgatcttgtaacctaaagtaacaaattttcaatctcttcagagatagttttcaaatgattattttattttatgcagcctcctttgcattaatgg |
42752508 |
T |
|
| Q |
333 |
agctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgct |
432 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752507 |
gtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgct |
42752408 |
T |
|
| Q |
433 |
attggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatt |
532 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
42752407 |
gttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacg |
42752308 |
T |
|
| Q |
533 |
taatttttaaatacgtccataacaccaagtaatttttctcc |
573 |
Q |
| |
|
| ||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
42752307 |
tcattttaaaatatgtcaattacaccaagtaatttttctcc |
42752267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 329 - 579
Target Start/End: Original strand, 42735561 - 42735811
Alignment:
| Q |
329 |
atggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtagg |
428 |
Q |
| |
|
|||| ||||||||||| ||||||||| | ||||||||||||||||||||| |||||| | || || | |||| ||||| | ||||||||||| ||||| |
|
|
| T |
42735561 |
atggggctcttgatcctcataaggcacatggaaaaatattggtatgtcttgaaggtgaaaatagtaaacttgaaaagggcatagaagcttctcgagtagg |
42735660 |
T |
|
| Q |
429 |
tgctattggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatgga |
528 |
Q |
| |
|
||||||||||||||| |||| || ||| | || ||||| || || |||||| ||| ||||| |||||||| |||||| |||||| ||| |||||| |
|
|
| T |
42735661 |
tgctattggaatgatcttggttattgagagggagtcagggggagaagttatagctgatgctcacgtgcttccagcttcaaatgttaatgttaccgatgga |
42735760 |
T |
|
| Q |
529 |
gatttaatttttaaatacgtccataacaccaagtaatttttctcctatgct |
579 |
Q |
| |
|
|| |||||||| |||| | |||| |||||||||||||||||| ||||| |
|
|
| T |
42735761 |
agttacatttttaattacgccaataaaaccaagtaatttttctcccatgct |
42735811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 42735319 - 42735459
Alignment:
| Q |
65 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
164 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||| |||| ||| |
|
|
| T |
42735319 |
tttttaatgttagggagctagcctttcagagtctcacttaccacctcataagttgtttccattgataagtggtgcaaatgccaacgttgataatgtatct |
42735418 |
T |
|
| Q |
165 |
ccagaggatgcgtaagaatgcttttgctttatgttgacctt |
205 |
Q |
| |
|
| || | ||||||||||||||||| ||| ||||||||| |
|
|
| T |
42735419 |
gccgaacaagcgtaagaatgcttttgtcttaagttgacctt |
42735459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 42768900 - 42768796
Alignment:
| Q |
349 |
aaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattttgg |
448 |
Q |
| |
|
||||| || ||||||||| | || ||||||||||| |||| | ||||| ||||||||||||| ||||| || | | ||||||| ||||||||||||||| |
|
|
| T |
42768900 |
aaggctaaaggaaaaatagttgtttgtcttcgaggcgacaatgatagaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttgg |
42768801 |
T |
|
| Q |
449 |
ctaat |
453 |
Q |
| |
|
||||| |
|
|
| T |
42768800 |
ctaat |
42768796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 42716486 - 42716436
Alignment:
| Q |
403 |
aagggtgtggaagcttctcgtgtaggtgctattggaatgattttggctaat |
453 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
42716486 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
42716436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 42769146 - 42769028
Alignment:
| Q |
65 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
164 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| | || |||||||||||||| |||||||| |||||||| | ||||| |||| ||||| || ||| |
|
|
| T |
42769146 |
ttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgatcgtgcatct |
42769047 |
T |
|
| Q |
165 |
ccagaggatgcgtaagaat |
183 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
42769046 |
tcagatgatgcgtaagaat |
42769028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 42716787 - 42716706
Alignment:
| Q |
74 |
ttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgat |
155 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| | ||| |||||||||| |||||||||| || |||||||||||||| |||| |
|
|
| T |
42716787 |
ttagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgctgatgtcaaatatgat |
42716706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 329 - 573
Target Start/End: Original strand, 23041264 - 23041508
Alignment:
| Q |
329 |
atggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtagg |
428 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
23041264 |
atggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtagg |
23041363 |
T |
|
| Q |
429 |
tgctattggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatgga |
528 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23041364 |
tgctgttggaatgattttggctaatgacgaggcttcaggcggtgaaattatatctgacgctcatgtgcttcccgcttcacatgttaactttaaagatgga |
23041463 |
T |
|
| Q |
529 |
gatttaatttttaaatacgtccataacaccaagtaatttttctcc |
573 |
Q |
| |
|
| | ||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
23041464 |
aacgtcattttaaaatatgtcaattacaccaagtaatttttctcc |
23041508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 23041006 - 23041149
Alignment:
| Q |
19 |
ctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaattaccacctcataagtt |
118 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| |||| | |||||||| |
|
|
| T |
23041006 |
ctttgttattttaat-tctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaactaccgcggcataagtt |
23041104 |
T |
|
| Q |
119 |
gtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
163 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
23041105 |
gtatccattgattagtgctgctgatgccaaatttgatcatgtgtc |
23041149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University